Variant report

Variant	rs1933167
Chromosome Location	chr10:97447910-97447911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97438903..97441882-chr10:97445653..97448127,2	K562	blood:
2	chr10:97446799..97448496-chr10:97451292..97453225,2	K562	blood:
3	chr10:97442626..97444965-chr10:97447681..97450391,2	K562	blood:
4	chr10:97442460..97444341-chr10:97446324..97448349,2	MCF-7	breast:
5	chr10:97444989..97451306-chr10:97451745..97454944,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10786229	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786237	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882645	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882647	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882651	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882652	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188416	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12244124	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12244559	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12251664	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12267876	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1268608	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935816	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2297788	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2986401	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3181129	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3793749	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3901451	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4406763	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4614366	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4918960	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs501819	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs507017	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs535449	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6584013	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069943	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7075081	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079312	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097074	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894648	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920801	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9663413	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1933167	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97427800-97452600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:97431800-97450600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:97431800-97451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:97432000-97450800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:97432800-97452000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:97433000-97451800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:97433400-97451400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:97433800-97452600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:97434000-97452000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:97434200-97452000	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:97434400-97450600	Strong transcription	Dnd41	blood
14	chr10:97434400-97451000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr10:97434400-97451600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:97434400-97452200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:97434600-97450400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:97434600-97450800	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:97434600-97451000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:97434600-97451600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr10:97434800-97451800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:97434800-97451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:97435000-97451200	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr10:97435000-97452000	Strong transcription	Placenta	Placenta
25	chr10:97435600-97451000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:97435600-97451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:97435800-97449200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:97436000-97449400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97436200-97452000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:97436200-97452200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:97436400-97451800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:97436600-97450200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:97437000-97448600	Strong transcription	Fetal Intestine Large	intestine
34	chr10:97437200-97451400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr10:97437200-97451800	Strong transcription	Primary T cells from cord blood	blood
36	chr10:97437200-97452400	Strong transcription	Ovary	ovary
37	chr10:97437400-97448400	Strong transcription	GM12878-XiMat	blood
38	chr10:97437400-97450600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:97437400-97451600	Strong transcription	Duodenum Mucosa	Duodenum
40	chr10:97437400-97451800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:97437400-97452000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:97437400-97452200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr10:97438600-97451600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr10:97438800-97449800	Strong transcription	Primary B cells from cord blood	blood
45	chr10:97438800-97452000	Strong transcription	Osteobl	bone
46	chr10:97439000-97449800	Strong transcription	HUVEC	blood vessel
47	chr10:97439600-97451200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:97439600-97452400	Strong transcription	Fetal Muscle Leg	muscle
49	chr10:97439800-97451600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:97440200-97449400	Strong transcription	Muscle Satellite Cultured Cells	--

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