Variant report

Variant	rs10882645
Chromosome Location	chr10:97404364-97404365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97403144..97405110-chr10:97412566..97414217,2	K562	blood:
2	chr10:97396628..97399173-chr10:97403561..97405161,2	K562	blood:
3	chr10:97403502..97406467-chr10:97420459..97422699,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10786229	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882647	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882651	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882652	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188416	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12244124	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12244559	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12251664	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267876	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1268608	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933167	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2297788	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2986401	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793749	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918960	0.81[ASN][1000 genomes]
rs501819	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507017	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs535449	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs543672	0.83[ASN][1000 genomes]
rs6584013	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7069943	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7075081	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7079312	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7097074	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7894648	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895976	0.85[AFR][1000 genomes]
rs7920801	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9663413	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882645	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL
rs10882645	ENTPD1	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
5	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
8	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:97380600-97408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:97380800-97409000	Strong transcription	Osteobl	bone
11	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
12	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:97385800-97408600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:97386600-97411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:97388800-97411000	Weak transcription	Fetal Brain Male	brain
17	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:97390000-97411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:97393400-97404600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr10:97394400-97411400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:97397200-97405400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:97399800-97406200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:97399800-97413600	Strong transcription	Dnd41	blood
25	chr10:97400000-97412600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:97400800-97411200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:97401200-97406400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:97401200-97411000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:97401800-97409200	Strong transcription	Primary B cells from cord blood	blood
31	chr10:97402000-97408600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
33	chr10:97402600-97405600	Weak transcription	Fetal Lung	lung
34	chr10:97402600-97405600	Weak transcription	Fetal Thymus	thymus
35	chr10:97402600-97410000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:97402600-97411000	Weak transcription	Thymus	Thymus
37	chr10:97402800-97404400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:97402800-97404600	Weak transcription	Pancreas	Pancrea
39	chr10:97402800-97405400	Weak transcription	HUVEC	blood vessel
40	chr10:97402800-97410000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:97402800-97410800	Weak transcription	Brain Substantia Nigra	brain
42	chr10:97402800-97411000	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:97402800-97411000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:97403000-97404400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97403000-97404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:97403000-97404400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:97403000-97404400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:97403000-97404400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:97403000-97404400	Weak transcription	Fetal Muscle Trunk	muscle

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