Variant report

Variant	rs12267876
Chromosome Location	chr10:97414561-97414562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10786229	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882645	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882647	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882651	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882652	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188416	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12244124	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12244559	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12251664	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1268608	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933167	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297788	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2986401	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3793749	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs501819	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs507017	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs535449	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543672	0.82[ASN][1000 genomes]
rs6584013	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7069943	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7075081	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079312	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7097074	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894648	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895976	0.80[AFR][1000 genomes]
rs7920801	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9663413	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12267876	ENTPD1	cis	multi-tissue	Pritchard
rs12267876	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
5	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:97404800-97415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:97406400-97415200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:97407800-97415400	Weak transcription	Small Intestine	intestine
10	chr10:97409000-97415200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:97411400-97415200	Weak transcription	Lung	lung
12	chr10:97411600-97415400	Weak transcription	Esophagus	oesophagus
13	chr10:97411600-97415400	Weak transcription	Psoas Muscle	Psoas
14	chr10:97411600-97415600	Weak transcription	Thymus	Thymus
15	chr10:97411600-97415600	Weak transcription	Spleen	Spleen
16	chr10:97411800-97414600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:97411800-97414600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97411800-97415000	Weak transcription	Colonic Mucosa	Colon
19	chr10:97411800-97415000	Weak transcription	Fetal Lung	lung
20	chr10:97411800-97415200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:97411800-97415200	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:97411800-97415200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:97411800-97415200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:97411800-97415400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:97411800-97415400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:97412000-97414600	Weak transcription	NHDF-Ad	bronchial
27	chr10:97412000-97415000	Weak transcription	Fetal Kidney	kidney
28	chr10:97412000-97415000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:97412000-97415200	Weak transcription	Brain Anterior Caudate	brain
30	chr10:97412000-97415400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:97412000-97415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr10:97412200-97414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:97412200-97415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:97412200-97415000	Weak transcription	A549	lung
35	chr10:97412200-97415200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:97412200-97415400	Weak transcription	Fetal Thymus	thymus
37	chr10:97412600-97414600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:97412600-97415000	Weak transcription	Brain Germinal Matrix	brain
39	chr10:97412600-97415200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:97412600-97415200	Weak transcription	Fetal Brain Female	brain
41	chr10:97412600-97415400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:97412800-97415200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr10:97412800-97415200	Weak transcription	Left Ventricle	heart
44	chr10:97412800-97415200	Weak transcription	Ovary	ovary
45	chr10:97413000-97414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:97413000-97414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:97413000-97414600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:97413000-97414600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:97413000-97414600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:97413000-97414600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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