Variant report

Variant	rs7097074
Chromosome Location	chr10:97459616-97459617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10736093	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10748634	0.88[JPT][hapmap]
rs10748638	0.94[JPT][hapmap]
rs10748642	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs10748643	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs10748648	0.93[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap]
rs10786228	0.94[JPT][hapmap]
rs10786229	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786236	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10786237	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882645	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882646	0.89[JPT][hapmap]
rs10882647	0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882651	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882652	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882655	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10882656	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.80[ASN][1000 genomes]
rs10882657	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10882660	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs10882664	0.88[JPT][hapmap]
rs10882665	0.88[JPT][hapmap]
rs10882673	0.93[CHB][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap]
rs10882675	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10882676	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs11188414	0.94[JPT][hapmap]
rs11188416	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188445	0.80[ASN][1000 genomes]
rs11188446	0.80[ASN][1000 genomes]
rs11188449	0.80[AFR][1000 genomes]
rs11188452	0.80[AFR][1000 genomes]
rs11188486	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs11188497	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs11188513	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12244124	0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12244559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12251664	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12267876	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1268608	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1340837	0.93[CHB][hapmap]
rs1342790	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1342791	0.88[JPT][hapmap]
rs1418709	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1573112	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs1933165	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1933167	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933169	0.87[JPT][hapmap]
rs1933172	0.80[ASN][1000 genomes]
rs1935816	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2051052	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2095713	0.80[ASN][1000 genomes]
rs2153913	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs2153914	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2185818	1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap]
rs2211002	0.88[JPT][hapmap]
rs2226163	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2275273	0.94[JPT][hapmap]
rs2275759	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2297788	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2861147	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs2861148	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2861149	0.89[JPT][hapmap]
rs2901873	0.88[JPT][hapmap]
rs2986401	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3176881	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3176891	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3181123	0.88[JPT][hapmap]
rs3181124	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3181129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3181131	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3750700	0.94[JPT][hapmap]
rs3750701	0.94[JPT][hapmap]
rs3793749	0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3814159	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3901451	0.87[AMR][1000 genomes]
rs3929900	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3934409	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3949478	0.88[JPT][hapmap]
rs4074424	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs4075310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4075311	0.93[CHB][hapmap]
rs4290159	0.93[JPT][hapmap]
rs4381306	0.80[AFR][1000 genomes]
rs4396219	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs4406763	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4431963	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs4551688	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs4582902	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4614366	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4918950	0.89[JPT][hapmap]
rs4918960	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4918962	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs496426	0.94[JPT][hapmap]
rs5014871	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs501819	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs507017	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs535449	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6584013	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6584017	0.80[ASN][1000 genomes]
rs6584022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6584023	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs6584027	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7067762	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7069943	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7071836	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs7074403	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7075081	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077566	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7079312	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086986	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs7088584	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7094382	0.80[AFR][1000 genomes]
rs7094484	0.80[AFR][1000 genomes]
rs7095587	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs7096317	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs7894648	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7902190	0.87[JPT][hapmap]
rs7909569	0.89[JPT][hapmap]
rs7920801	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs945958	0.89[JPT][hapmap]
rs9663413	0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7097074	ENTPD1	cis	multi-tissue	Pritchard
rs7097074	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97458200-97459800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:97458800-97481400	Weak transcription	Primary B cells from cord blood	blood

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