Variant report

Variant	rs4406763
Chromosome Location	chr10:97563394-97563395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10736094	0.86[EUR][1000 genomes]
rs10748645	0.80[ASN][1000 genomes]
rs10786229	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10786237	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882651	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882652	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10882666	0.80[ASN][1000 genomes]
rs11188486	0.80[ASN][1000 genomes]
rs11188513	0.86[EUR][1000 genomes]
rs11517041	0.80[ASN][1000 genomes]
rs12244559	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1933167	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1935816	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2105359	0.83[AFR][1000 genomes]
rs2153914	0.87[EUR][1000 genomes]
rs2297788	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2901872	0.80[ASN][1000 genomes]
rs3181129	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3901451	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4396219	0.80[ASN][1000 genomes]
rs4614366	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918969	0.80[ASN][1000 genomes]
rs4918973	0.85[EUR][1000 genomes]
rs6584013	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6584030	0.80[ASN][1000 genomes]
rs7075081	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7079312	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7096248	0.83[AFR][1000 genomes]
rs7097074	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7894648	0.85[AMR][1000 genomes]
rs7913082	0.80[ASN][1000 genomes]
rs7914286	0.80[ASN][1000 genomes]
rs7920801	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4406763	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97566200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:97558800-97566400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood

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