Variant report

Variant	rs7899286
Chromosome Location	chr10:97340536-97340537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321132..97322858-chr10:97338757..97340666,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882639	0.91[CHD][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs11188374	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188375	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188385	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12098522	0.84[JPT][hapmap]
rs1933168	0.83[JPT][hapmap]
rs2105359	0.84[JPT][hapmap]
rs3829157	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs543672	0.80[AFR][1000 genomes]
rs56085433	0.95[ASN][1000 genomes]
rs56397888	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584009	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584020	0.82[JPT][hapmap]
rs7072291	0.81[MEX][hapmap];0.85[TSI][hapmap]
rs7085474	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7096248	0.84[JPT][hapmap]
rs7895441	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895976	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7897091	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs7906450	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7908923	0.84[JPT][hapmap]
rs7921467	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7899286	ANKRD2	cis	parietal	SCAN
rs7899286	ZFYVE27	cis	parietal	SCAN
rs7899286	ENTPD1	cis	lymphoblastoid	seeQTL
rs7899286	PDE6C	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:97339600-97351400	Weak transcription	Placenta	Placenta
4	chr10:97340000-97340800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:97340200-97342600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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