Variant report

Variant	rs7072291
Chromosome Location	chr10:97328145-97328146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97319586..97322599-chr10:97327205..97330905,3	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509689	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882639	1.00[CEU][hapmap];0.85[GIH][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs11188385	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11188395	0.82[EUR][1000 genomes]
rs11188402	0.80[EUR][1000 genomes]
rs11188434	1.00[JPT][hapmap]
rs12098522	0.83[CHD][hapmap];0.91[JPT][hapmap]
rs17110981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110984	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110999	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933168	0.90[JPT][hapmap]
rs3829157	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs56055942	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56085433	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56193579	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584020	0.90[JPT][hapmap]
rs7076303	0.81[EUR][1000 genomes]
rs7089081	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73327043	0.81[EUR][1000 genomes]
rs73327044	0.81[EUR][1000 genomes]
rs74150942	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895441	0.81[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs7895976	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7897091	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7899286	0.81[MEX][hapmap];0.85[TSI][hapmap]
rs7906450	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7908923	0.84[CHD][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7072291	ANKRD2	cis	parietal	SCAN
rs7072291	ZFYVE27	cis	parietal	SCAN
rs7072291	PDE6C	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97329200	Enhancers	Placenta	Placenta
2	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
3	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:97326200-97332000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:97327000-97329200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:97327000-97329600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:97327400-97328400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:97327400-97328400	Enhancers	Fetal Lung	lung
12	chr10:97327600-97328200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:97327600-97328200	Enhancers	Stomach Mucosa	stomach
14	chr10:97327600-97328200	Enhancers	HUVEC	blood vessel
15	chr10:97327600-97328400	Enhancers	Fetal Stomach	stomach
16	chr10:97327600-97328400	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:97327600-97328600	Enhancers	Colon Smooth Muscle	Colon
18	chr10:97327600-97328800	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:97327800-97328200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:97327800-97328200	Weak transcription	Right Atrium	heart
21	chr10:97327800-97328400	Enhancers	Aorta	Aorta
22	chr10:97327800-97328400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr10:97328000-97328400	Enhancers	Lung	lung
24	chr10:97328000-97328400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr10:97328000-97329200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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