Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321132..97322858-chr10:97338757..97340666,2	K562	blood:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10882639	0.81[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs11188374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188375	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188385	0.98[ASN][1000 genomes]
rs12098522	0.84[JPT][hapmap]
rs1933168	0.83[JPT][hapmap]
rs2105359	0.84[JPT][hapmap]
rs3829157	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs56085433	0.95[ASN][1000 genomes]
rs56397888	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6584009	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584020	0.82[JPT][hapmap]
rs7072291	0.81[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs7085474	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7096248	0.84[JPT][hapmap]
rs7895976	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs7897091	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs7899286	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7908923	0.84[JPT][hapmap]
rs7921467	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7895441	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:97338800-97340200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:97339000-97340200	Enhancers	Aorta	Aorta
5	chr10:97339400-97340200	Enhancers	Right Atrium	heart
6	chr10:97339600-97340000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:97339600-97340200	Enhancers	Left Ventricle	heart
8	chr10:97339600-97351400	Weak transcription	Placenta	Placenta

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