Variant report

Variant	rs6584009
Chromosome Location	chr10:97335609-97335610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882639	0.82[ASN][1000 genomes]
rs11188374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188375	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188385	1.00[ASN][1000 genomes]
rs11188395	0.80[ASN][1000 genomes]
rs3829157	0.81[ASN][1000 genomes]
rs56085433	0.98[ASN][1000 genomes]
rs56397888	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076303	0.81[ASN][1000 genomes]
rs7085474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73327043	0.81[ASN][1000 genomes]
rs73327044	0.81[ASN][1000 genomes]
rs7895441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895976	0.81[ASN][1000 genomes]
rs7899286	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906450	1.00[ASN][1000 genomes]
rs7921467	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97333200-97336000	Enhancers	Fetal Heart	heart
2	chr10:97334800-97338400	Weak transcription	HSMMtube	muscle
3	chr10:97334800-97339400	Weak transcription	Right Atrium	heart
4	chr10:97334800-97339600	Weak transcription	Left Ventricle	heart
5	chr10:97335000-97339000	Weak transcription	Aorta	Aorta
6	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
7	chr10:97335600-97340800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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