Variant report

Variant	rs56085433
Chromosome Location	chr10:97326325-97326326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10509689	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882639	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188374	0.98[ASN][1000 genomes]
rs11188375	0.94[ASN][1000 genomes]
rs11188385	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188395	0.82[EUR][1000 genomes]
rs11188402	0.80[EUR][1000 genomes]
rs17110981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110984	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110999	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3829157	0.81[EUR][1000 genomes]
rs56055942	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56193579	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56397888	0.99[ASN][1000 genomes]
rs6584009	0.98[ASN][1000 genomes]
rs7072291	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076303	0.81[EUR][1000 genomes]
rs7085474	0.98[ASN][1000 genomes]
rs7089081	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73327043	0.81[EUR][1000 genomes]
rs73327044	0.81[EUR][1000 genomes]
rs74150942	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7895441	0.95[ASN][1000 genomes]
rs7895976	0.80[EUR][1000 genomes]
rs7897091	0.81[EUR][1000 genomes]
rs7899286	0.95[ASN][1000 genomes]
rs7906450	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7921467	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
3	chr10:97321600-97328000	Weak transcription	Lung	lung
4	chr10:97321600-97329200	Enhancers	Placenta	Placenta
5	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
6	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97323000-97328000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97324600-97326400	Enhancers	Fetal Stomach	stomach
14	chr10:97324800-97326600	Enhancers	Colon Smooth Muscle	Colon
15	chr10:97325000-97326600	Enhancers	HepG2	liver
16	chr10:97325600-97326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:97325800-97326400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:97325800-97326600	Enhancers	Stomach Smooth Muscle	stomach
19	chr10:97326200-97327400	Weak transcription	Fetal Lung	lung
20	chr10:97326200-97327600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:97326200-97327800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97326200-97327800	Weak transcription	Hela-S3	cervix
23	chr10:97326200-97332000	Weak transcription	Brain Cingulate Gyrus	brain

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