Variant report

Variant	rs11188385
Chromosome Location	chr10:97357112-97357113
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10509689	0.90[EUR][1000 genomes]
rs10882639	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188374	1.00[ASN][1000 genomes]
rs11188375	0.97[ASN][1000 genomes]
rs11188395	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188402	0.85[EUR][1000 genomes]
rs12098522	0.84[JPT][hapmap]
rs17110981	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17110984	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17110999	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1933168	0.83[JPT][hapmap]
rs2105359	0.84[JPT][hapmap]
rs3829157	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs543672	0.89[AFR][1000 genomes]
rs56055942	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56085433	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56193579	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56397888	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6584009	1.00[ASN][1000 genomes]
rs6584020	0.82[JPT][hapmap]
rs7072291	0.89[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7076303	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7085474	1.00[ASN][1000 genomes]
rs7089081	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7096248	0.84[JPT][hapmap]
rs73327043	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73327044	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74150942	0.85[EUR][1000 genomes]
rs7895441	0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.98[ASN][1000 genomes]
rs7895976	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7897091	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes]
rs7899286	0.87[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7906450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908923	0.84[JPT][hapmap];0.84[TSI][hapmap]
rs7921467	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv948146	chr10:97350519-97357135	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11188385	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas

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