Variant report

Variant	nsv1054984
Chromosome Location	chr10:90122512-90278038
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:39)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
2	chr10:90243048..90244941-chr10:90246106..90249006,2	MCF-7	breast:
3	chr10:90236461..90237236-chr2:107269345..107270266,2	MCF-7	breast:
4	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:
5	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
6	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:
7	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:
8	chr10:90020897..90023455-chr10:90147656..90149656,2	MCF-7	breast:
9	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
10	chr10:90233064..90234940-chr11:69455221..69456769,2	MCF-7	breast:
11	chr10:90253538..90255456-chr10:90264130..90266420,2	MCF-7	breast:
12	chr10:90249239..90251953-chr13:73810044..73812840,2	MCF-7	breast:
13	chr10:89619429..89620951-chr10:90148728..90149780,5	MCF-7	breast:
14	chr10:90212145..90213848-chr10:90226282..90228506,2	MCF-7	breast:
15	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
16	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
17	chr10:90266844..90269778-chr10:90274233..90275948,2	MCF-7	breast:
18	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:
19	chr10:90212145..90213848-chr10:90226282..90228506,2	MCF-7	breast:
20	chr10:90253538..90255456-chr10:90264130..90266420,2	MCF-7	breast:
21	chr10:90105977..90106882-chr10:90145125..90145815,2	MCF-7	breast:
22	chr10:90266844..90269778-chr10:90274233..90275948,2	MCF-7	breast:
23	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
24	chr10:90243048..90244941-chr10:90246106..90249006,2	MCF-7	breast:
25	chr10:89610488..89611143-chr10:90161415..90162330,2	MCF-7	breast:
26	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:
27	chr10:89610378..89611175-chr10:90148936..90149878,2	MCF-7	breast:
28	chr10:89622921..89625081-chr10:90159029..90160699,2	MCF-7	breast:
29	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
30	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
31	chr10:89621134..89622891-chr10:90266765..90269428,2	MCF-7	breast:
32	chr10:90161662..90162205-chr10:90312601..90313346,2	MCF-7	breast:
33	chr10:90145294..90146833-chr10:90461618..90463490,2	MCF-7	breast:
34	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
35	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
36	chr10:89873098..89874666-chr10:90125714..90128482,2	MCF-7	breast:
37	chr10:90234207..90234776-chr10:90285280..90285826,2	MCF-7	breast:
38	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
39	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227268	chromatin interactions
ENSG00000171862	chromatin interactions
ENSG00000110092	chromatin interactions

Extended variants
information (count: 5066 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:5066 , 50 per page) page: 1 2 3 4 5 6 7 ... 102

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3740279	chr10:90122512-90122513	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs113697812	chr10:90122525-90122526	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs3740280	chr10:90122555-90122556	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375615489	chr10:90122597-90122598	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs540346152	chr10:90122603-90122604	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs191794581	chr10:90122640-90122641	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs72820013	chr10:90122676-90122677	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs548831706	chr10:90122698-90122699	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs576808934	chr10:90122717-90122718	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs114071939	chr10:90122785-90122786	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552545838	chr10:90122847-90122848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570844797	chr10:90122863-90122864	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs139270691	chr10:90122897-90122898	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572848573	chr10:90122969-90122970	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372058434	chr10:90122975-90122976	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs183637249	chr10:90122993-90122994	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371242563	chr10:90123027-90123028	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs544183312	chr10:90123079-90123080	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555845405	chr10:90123089-90123090	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535550888	chr10:90123106-90123107	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556778392	chr10:90123147-90123148	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201719501	chr10:90123171-90123172	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs186952098	chr10:90123185-90123186	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs141806719	chr10:90123186-90123187	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539724599	chr10:90123330-90123331	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557741964	chr10:90123370-90123371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572814376	chr10:90123376-90123377	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs539883807	chr10:90123398-90123399	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12220632	chr10:90123414-90123415	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs573830813	chr10:90123424-90123425	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs150055632	chr10:90123436-90123437	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12219831	chr10:90123444-90123445	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs530982151	chr10:90123553-90123554	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs72820014	chr10:90123615-90123616	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs12572530	chr10:90123656-90123657	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs528760648	chr10:90123682-90123683	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546635724	chr10:90123773-90123774	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568104408	chr10:90123776-90123777	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529357468	chr10:90123806-90123807	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145391166	chr10:90123819-90123820	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs149221973	chr10:90123834-90123835	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568735206	chr10:90123859-90123860	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs367931054	chr10:90123873-90123874	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs79815662	chr10:90123875-90123876	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs557921766	chr10:90123908-90123909	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560233677	chr10:90124041-90124042	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566683743	chr10:90124088-90124089	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146674918	chr10:90124229-90124230	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192511402	chr10:90124286-90124287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs75981150	chr10:90124313-90124314	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Melanoma	20877625	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:1314 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90117400-90129200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90120000-90123400	Weak transcription	Aorta	Aorta
3	chr10:90120800-90122600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:90122000-90126200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:90122400-90122600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:90122400-90122800	Enhancers	Liver	Liver
7	chr10:90122800-90124600	Weak transcription	Liver	Liver
8	chr10:90124600-90124800	Enhancers	Liver	Liver
9	chr10:90126200-90134200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:90129200-90129400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:90129400-90130200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:90129800-90133200	Enhancers	Fetal Intestine Small	intestine
13	chr10:90130200-90130400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr10:90130200-90133600	Enhancers	Fetal Intestine Large	intestine
15	chr10:90130200-90134000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr10:90130400-90130600	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:90130400-90130800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr10:90130600-90131400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:90130600-90131600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:90130800-90131400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:90131400-90132200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:90131400-90132200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr10:90131600-90132800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:90131600-90134800	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:90131800-90132200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:90131800-90132200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:90131800-90132200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr10:90131800-90132400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:90131800-90132600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:90132000-90132200	Enhancers	Small Intestine	intestine
31	chr10:90132000-90132400	Active TSS	Brain Anterior Caudate	brain
32	chr10:90132000-90132400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr10:90132200-90132400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:90132200-90132400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:90132200-90132400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr10:90132200-90134600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:90132400-90132800	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr10:90132400-90133600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:90132800-90133400	Enhancers	Liver	Liver
40	chr10:90132800-90134800	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr10:90132800-90137800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:90133000-90134200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:90133600-90134000	Weak transcription	Fetal Intestine Large	intestine
44	chr10:90133600-90135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:90134000-90134400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr10:90134000-90134600	Enhancers	Fetal Intestine Large	intestine
47	chr10:90134200-90134800	Enhancers	Small Intestine	intestine
48	chr10:90134200-90135000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr10:90134200-90135200	Enhancers	Primary T cells from cord blood	blood
50	chr10:90134200-90135600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links