Variant report

Variant	rs12220632
Chromosome Location	chr10:90123414-90123415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10887807	0.92[ASN][1000 genomes]
rs11202703	0.83[ASN][1000 genomes]
rs11202705	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11202706	0.85[ASN][1000 genomes]
rs11202722	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs11202726	0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.89[ASN][1000 genomes]
rs11202731	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11202734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11528433	0.86[ASN][1000 genomes]
rs11598623	0.89[ASN][1000 genomes]
rs12217988	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12219831	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221213	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs12569922	0.94[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs12572813	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs1426617	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1582223	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1582224	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1613409	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1648512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1648523	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111200	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs1774970	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1774971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2195013	0.84[ASN][1000 genomes]
rs2241515	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.87[ASN][1000 genomes]
rs3740279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3781201	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs55749454	0.88[ASN][1000 genomes]
rs57949777	0.81[ASN][1000 genomes]
rs59184458	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59482232	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61260851	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7073755	0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7075138	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097606	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74149704	0.90[ASN][1000 genomes]
rs74149712	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149714	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149715	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs752709	0.92[ASN][1000 genomes]
rs7919335	0.84[ASN][1000 genomes]
rs792224	0.87[ASN][1000 genomes]
rs792225	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs792227	0.93[ASN][1000 genomes]
rs792228	0.96[ASN][1000 genomes]
rs792229	0.88[ASN][1000 genomes]
rs792232	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs880793	0.89[ASN][1000 genomes]
rs880794	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90117400-90129200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90122000-90126200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:90122800-90124600	Weak transcription	Liver	Liver

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