Variant report

Variant	rs10887807
Chromosome Location	chr10:90103996-90103997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89621098..89623104-chr10:90102972..90105384,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11202703	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11202705	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11202706	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11202722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11202726	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11202731	0.90[ASN][1000 genomes]
rs11202734	0.89[ASN][1000 genomes]
rs11528433	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11598623	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12217988	0.80[ASN][1000 genomes]
rs12219687	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12219831	0.83[ASN][1000 genomes]
rs12220632	0.92[ASN][1000 genomes]
rs12221213	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12569922	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572813	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1426617	0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1582223	0.84[ASN][1000 genomes]
rs1613409	0.89[ASN][1000 genomes]
rs1648512	0.90[ASN][1000 genomes]
rs1648523	0.84[ASN][1000 genomes]
rs17111200	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1774971	0.84[ASN][1000 genomes]
rs2195013	0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2241515	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3740279	0.92[ASN][1000 genomes]
rs3781201	0.97[ASN][1000 genomes]
rs55749454	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59513062	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7075138	0.86[ASN][1000 genomes]
rs7086211	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs74149704	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149714	0.85[ASN][1000 genomes]
rs74149715	0.85[ASN][1000 genomes]
rs752709	0.92[ASN][1000 genomes]
rs7919335	0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs792224	0.83[ASN][1000 genomes]
rs792225	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs792227	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs792228	0.91[ASN][1000 genomes]
rs792229	0.83[ASN][1000 genomes]
rs880793	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs880794	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90101800-90104000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:90102000-90106600	Weak transcription	Right Atrium	heart
3	chr10:90102800-90104200	Enhancers	HSMMtube	muscle
4	chr10:90103000-90104000	Enhancers	Brain Anterior Caudate	brain
5	chr10:90103000-90104200	Enhancers	Osteobl	bone
6	chr10:90103000-90104400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:90103200-90104600	Weak transcription	Dnd41	blood
8	chr10:90103400-90104000	Enhancers	Adipose Nuclei	Adipose
9	chr10:90103400-90104200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:90103400-90104200	Enhancers	Fetal Lung	lung
11	chr10:90103400-90104400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:90103400-90104400	Enhancers	Liver	Liver
13	chr10:90103400-90105000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:90103400-90106600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:90103600-90104000	Enhancers	Aorta	Aorta
16	chr10:90103600-90104000	Enhancers	Fetal Stomach	stomach
17	chr10:90103600-90104000	Enhancers	Ovary	ovary
18	chr10:90103600-90104000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:90103600-90104200	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:90103600-90104800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:90103600-90105000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:90103600-90105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:90103800-90104200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:90103800-90104200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:90103800-90104400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:90103800-90104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:90103800-90104800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:90103800-90105000	Enhancers	Brain Hippocampus Middle	brain
29	chr10:90103800-90106200	Weak transcription	Stomach Mucosa	stomach
30	chr10:90103800-90107200	Enhancers	HUES64 Cell Line	embryonic stem cell

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