Variant report

Variant	rs55749454
Chromosome Location	chr10:90099139-90099140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10887807	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202703	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11202705	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11202706	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11202722	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11202726	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202731	0.89[ASN][1000 genomes]
rs11202734	0.85[ASN][1000 genomes]
rs11528433	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598623	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12219687	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12219831	0.81[ASN][1000 genomes]
rs12220632	0.88[ASN][1000 genomes]
rs12221213	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12569922	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12572813	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1426617	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1582223	0.84[ASN][1000 genomes]
rs1613409	0.85[ASN][1000 genomes]
rs1648512	0.89[ASN][1000 genomes]
rs1648523	0.84[ASN][1000 genomes]
rs17111200	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1774971	0.84[ASN][1000 genomes]
rs2195013	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2241515	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740279	0.89[ASN][1000 genomes]
rs3781201	0.99[ASN][1000 genomes]
rs59513062	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7075138	0.85[ASN][1000 genomes]
rs7086211	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149704	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149714	0.82[ASN][1000 genomes]
rs74149715	0.82[ASN][1000 genomes]
rs752709	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7919335	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs792224	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs792225	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs792227	0.90[ASN][1000 genomes]
rs792228	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs792229	0.84[ASN][1000 genomes]
rs880793	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs880794	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90096600-90099600	Weak transcription	Aorta	Aorta
3	chr10:90096800-90099600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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