Variant report

Variant	nsv895879
Chromosome Location	chr10:90015725-90219298
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:41)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
2	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
3	chr10:90023314..90025859-chr10:90028654..90030958,2	MCF-7	breast:
4	chr10:89621287..89622791-chr10:90075182..90076872,2	MCF-7	breast:
5	chr10:90020897..90023455-chr10:90147656..90149656,2	MCF-7	breast:
6	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
7	chr10:90023314..90025859-chr10:90028654..90030958,2	MCF-7	breast:
8	chr10:89621098..89623104-chr10:90102972..90105384,2	MCF-7	breast:
9	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
10	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
11	chr10:89619839..89624557-chr10:90105061..90108196,4	MCF-7	breast:
12	chr10:90145294..90146833-chr10:90461618..90463490,2	MCF-7	breast:
13	chr10:89622921..89625081-chr10:90159029..90160699,2	MCF-7	breast:
14	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
15	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
16	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:
17	chr10:89620144..89622520-chr10:90093536..90095614,2	MCF-7	breast:
18	chr10:89622149..89624843-chr10:90106661..90108440,2	MCF-7	breast:
19	chr10:89621427..89624156-chr10:90017168..90019530,3	MCF-7	breast:
20	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
21	chr10:90020897..90023455-chr10:90147656..90149656,2	MCF-7	breast:
22	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
23	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
24	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:
25	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
26	chr10:89620307..89622864-chr10:90048277..90050868,3	MCF-7	breast:
27	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:
28	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
29	chr10:90016811..90018452-chr10:90028419..90030893,2	MCF-7	breast:
30	chr10:90161662..90162205-chr10:90312601..90313346,2	MCF-7	breast:
31	chr10:89873098..89874666-chr10:90125714..90128482,2	MCF-7	breast:
32	chr10:89619429..89620951-chr10:90148728..90149780,5	MCF-7	breast:
33	chr10:89610378..89611175-chr10:90148936..90149878,2	MCF-7	breast:
34	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:
35	chr10:90016811..90018452-chr10:90028419..90030893,2	MCF-7	breast:
36	chr10:89994341..89996792-chr10:90014241..90017227,2	MCF-7	breast:
37	chr10:90105977..90106882-chr10:90145125..90145815,2	MCF-7	breast:
38	chr10:90212145..90213848-chr10:90226282..90228506,2	MCF-7	breast:
39	chr10:89621801..89624106-chr10:90069786..90072244,2	MCF-7	breast:
40	chr10:90105977..90106882-chr10:90145125..90145815,2	MCF-7	breast:
41	chr10:89610488..89611143-chr10:90161415..90162330,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227268	chromatin interactions
ENSG00000171862	chromatin interactions

Extended variants
information (count: 6826 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:6826 , 50 per page) page: 1 2 3 4 5 6 7 ... 137

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17110418	chr10:90015725-90015726	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs372103456	chr10:90015748-90015749	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs11202694	chr10:90015785-90015786	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs78534845	chr10:90015825-90015826	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs538883375	chr10:90015833-90015834	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs544350333	chr10:90015840-90015841	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs114471613	chr10:90015853-90015854	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs76131348	chr10:90015858-90015859	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs545356640	chr10:90015862-90015863	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs113512760	chr10:90015885-90015886	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs151152876	chr10:90015973-90015974	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs527653787	chr10:90016064-90016065	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs188329281	chr10:90016082-90016083	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs569066990	chr10:90016137-90016138	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs114220372	chr10:90016195-90016196	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs76024090	chr10:90016200-90016201	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs72818058	chr10:90016208-90016209	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs78538343	chr10:90016214-90016215	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538950712	chr10:90016215-90016216	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs547359427	chr10:90016228-90016229	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs140389278	chr10:90016231-90016232	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs181780037	chr10:90016233-90016234	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs147022854	chr10:90016246-90016247	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs370712495	chr10:90016247-90016248	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs575633476	chr10:90016258-90016259	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs575689322	chr10:90016279-90016280	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs138070987	chr10:90016303-90016304	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs556748198	chr10:90016313-90016314	Flanking Active TSS Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs12415489	chr10:90016491-90016492	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs76162660	chr10:90016571-90016572	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs545701998	chr10:90016572-90016573	Flanking Active TSS Weak transcription Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs187633032	chr10:90016646-90016647	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111946889	chr10:90016647-90016648	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs113652798	chr10:90016662-90016663	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs142182320	chr10:90016676-90016677	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs191510190	chr10:90016709-90016710	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs737391	chr10:90016796-90016797	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs61856162	chr10:90016799-90016800	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs35477000	chr10:90016801-90016802	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79209075	chr10:90016802-90016803	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs397846654	chr10:90016813-90016814	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs369765444	chr10:90016897-90016898	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs138197952	chr10:90016916-90016917	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149597608	chr10:90016926-90016927	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs202100166	chr10:90016943-90016944	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs542475276	chr10:90017010-90017011	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs532172358	chr10:90017012-90017013	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs182076771	chr10:90017029-90017030	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559240749	chr10:90017079-90017080	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535851506	chr10:90017128-90017129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Melanoma	20877625	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1855 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
4	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:90013200-90015800	Enhancers	NHLF	lung
8	chr10:90013400-90015800	Enhancers	Pancreas	Pancrea
9	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
12	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
13	chr10:90014600-90019800	Weak transcription	Dnd41	blood
14	chr10:90014600-90025600	Weak transcription	Osteobl	bone
15	chr10:90014800-90015800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:90015000-90015800	Weak transcription	Fetal Kidney	kidney
17	chr10:90015000-90015800	Enhancers	NHDF-Ad	bronchial
18	chr10:90015000-90020200	Weak transcription	HMEC	breast
19	chr10:90015200-90015800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:90015200-90016000	Weak transcription	Ovary	ovary
21	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:90015600-90015800	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr10:90015600-90015800	Enhancers	Esophagus	oesophagus
24	chr10:90015600-90015800	Enhancers	HSMM	muscle
25	chr10:90015600-90016000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr10:90015600-90016600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:90015600-90016600	Active TSS	Fetal Muscle Trunk	muscle
28	chr10:90015600-90016600	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:90015600-90017200	Weak transcription	Fetal Intestine Large	intestine
30	chr10:90015800-90016200	Weak transcription	HSMM	muscle
31	chr10:90015800-90016200	Active TSS	NHLF	lung
32	chr10:90015800-90016400	Active TSS	Adipose Nuclei	Adipose
33	chr10:90015800-90016400	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr10:90015800-90016400	Active TSS	NHDF-Ad	bronchial
35	chr10:90015800-90016600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:90015800-90016600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr10:90015800-90016600	Enhancers	Fetal Kidney	kidney
38	chr10:90015800-90017000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:90015800-90018600	Weak transcription	Pancreas	Pancrea
40	chr10:90016000-90016200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:90016000-90016200	Active TSS	HSMMtube	muscle
42	chr10:90016000-90016400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:90016000-90016400	Active TSS	Ovary	ovary
44	chr10:90016200-90016400	Flanking Active TSS	HSMMtube	muscle
45	chr10:90016200-90016600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:90016200-90016600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr10:90016200-90016600	Flanking Active TSS	NHLF	lung
48	chr10:90016400-90016600	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr10:90016400-90016600	Enhancers	Fetal Muscle Leg	muscle
50	chr10:90016400-90016600	Flanking Active TSS	Ovary	ovary

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