Variant report

Variant	rs11202694
Chromosome Location	chr10:90015785-90015786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89994341..89996792-chr10:90014241..90017227,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509541	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10788589	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10887794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12218911	0.90[ASN][1000 genomes]
rs7070722	0.93[EUR][1000 genomes]
rs7086615	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
4	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:90013200-90015800	Enhancers	NHLF	lung
8	chr10:90013400-90015800	Enhancers	Pancreas	Pancrea
9	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
12	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
13	chr10:90014600-90019800	Weak transcription	Dnd41	blood
14	chr10:90014600-90025600	Weak transcription	Osteobl	bone
15	chr10:90014800-90015800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:90015000-90015800	Weak transcription	Fetal Kidney	kidney
17	chr10:90015000-90015800	Enhancers	NHDF-Ad	bronchial
18	chr10:90015000-90020200	Weak transcription	HMEC	breast
19	chr10:90015200-90015800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:90015200-90016000	Weak transcription	Ovary	ovary
21	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:90015600-90015800	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr10:90015600-90015800	Enhancers	Esophagus	oesophagus
24	chr10:90015600-90015800	Enhancers	HSMM	muscle
25	chr10:90015600-90016000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr10:90015600-90016600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:90015600-90016600	Active TSS	Fetal Muscle Trunk	muscle
28	chr10:90015600-90016600	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:90015600-90017200	Weak transcription	Fetal Intestine Large	intestine

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