Variant report

Variant	rs10788589
Chromosome Location	chr10:90026566-90026567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887794	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10887795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11202694	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12218911	0.83[ASN][1000 genomes]
rs7070722	0.81[EUR][1000 genomes]
rs7086615	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:90025400-90027000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:90025400-90027000	Enhancers	NHDF-Ad	bronchial
4	chr10:90025400-90027200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90025600-90026600	Enhancers	HSMM	muscle
6	chr10:90025600-90026800	Enhancers	Aorta	Aorta
7	chr10:90025600-90026800	Enhancers	NHLF	lung
8	chr10:90025600-90027000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:90025600-90027600	Enhancers	Thymus	Thymus
10	chr10:90025800-90026600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:90025800-90026600	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:90025800-90026600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:90025800-90026800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:90025800-90026800	Enhancers	Fetal Stomach	stomach
15	chr10:90025800-90026800	Enhancers	HSMMtube	muscle
16	chr10:90025800-90026800	Flanking Active TSS	NH-A	brain
17	chr10:90025800-90027200	Enhancers	GM12878-XiMat	blood
18	chr10:90025800-90027400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:90025800-90027600	Enhancers	Fetal Thymus	thymus
20	chr10:90025800-90030600	Enhancers	Dnd41	blood
21	chr10:90026000-90026600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:90026000-90026600	Weak transcription	Ovary	ovary
23	chr10:90026000-90026800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:90026000-90026800	Enhancers	Right Atrium	heart
25	chr10:90026000-90026800	Enhancers	Spleen	Spleen
26	chr10:90026000-90027800	Enhancers	Primary T cells from cord blood	blood
27	chr10:90026000-90030000	Weak transcription	Small Intestine	intestine
28	chr10:90026000-90031000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:90026200-90026800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr10:90026200-90026800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:90026200-90027200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:90026200-90027200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr10:90026400-90026600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:90026400-90026600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:90026400-90026600	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:90026400-90026600	Enhancers	Osteobl	bone
37	chr10:90026400-90026800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:90026400-90026800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:90026400-90027200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:90026400-90027200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:90026400-90030800	Weak transcription	Adipose Nuclei	Adipose

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