Variant report

Variant	rs10887794
Chromosome Location	chr10:90015274-90015275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89994341..89996792-chr10:90014241..90017227,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509541	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10788589	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10887795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11202695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12218911	0.89[ASN][1000 genomes]
rs7070722	0.93[EUR][1000 genomes]
rs7086615	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90011600-90016200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
4	chr10:90012400-90015800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:90013000-90015800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:90013000-90016000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:90013200-90015800	Enhancers	NHLF	lung
8	chr10:90013400-90015600	Enhancers	Stomach Mucosa	stomach
9	chr10:90013400-90015800	Enhancers	Pancreas	Pancrea
10	chr10:90014000-90015600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:90014400-90015400	Enhancers	A549	lung
14	chr10:90014400-90015600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:90014400-90015600	Weak transcription	HSMM	muscle
16	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
17	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
18	chr10:90014600-90019800	Weak transcription	Dnd41	blood
19	chr10:90014600-90025600	Weak transcription	Osteobl	bone
20	chr10:90014800-90015400	Enhancers	Gastric	stomach
21	chr10:90014800-90015600	Enhancers	Fetal Intestine Large	intestine
22	chr10:90014800-90015600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:90014800-90015800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:90015000-90015600	Weak transcription	Esophagus	oesophagus
25	chr10:90015000-90015800	Weak transcription	Fetal Kidney	kidney
26	chr10:90015000-90015800	Enhancers	NHDF-Ad	bronchial
27	chr10:90015000-90020200	Weak transcription	HMEC	breast
28	chr10:90015200-90015600	Enhancers	Adipose Nuclei	Adipose
29	chr10:90015200-90015800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:90015200-90016000	Weak transcription	Ovary	ovary
31	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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