Variant report

Variant	rs10887795
Chromosome Location	chr10:90017377-90017378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509541	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10788589	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10887794	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202694	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218911	0.93[ASN][1000 genomes]
rs7070722	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086615	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
4	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
5	chr10:90014600-90019800	Weak transcription	Dnd41	blood
6	chr10:90014600-90025600	Weak transcription	Osteobl	bone
7	chr10:90015000-90020200	Weak transcription	HMEC	breast
8	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:90015800-90018600	Weak transcription	Pancreas	Pancrea
10	chr10:90016600-90017600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:90016600-90017600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:90016600-90017600	Enhancers	NHDF-Ad	bronchial
13	chr10:90016600-90017600	Enhancers	NHLF	lung
14	chr10:90017200-90017400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:90017200-90017800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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