Variant report

Variant	rs78538343
Chromosome Location	chr10:90016214-90016215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89994341..89996792-chr10:90014241..90017227,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90005800-90017200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:90012200-90016600	Enhancers	Psoas Muscle	Psoas
3	chr10:90014200-90018400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:90014400-90017400	Weak transcription	HUVEC	blood vessel
6	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
7	chr10:90014600-90019800	Weak transcription	Dnd41	blood
8	chr10:90014600-90025600	Weak transcription	Osteobl	bone
9	chr10:90015000-90020200	Weak transcription	HMEC	breast
10	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:90015600-90016600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:90015600-90016600	Active TSS	Fetal Muscle Trunk	muscle
13	chr10:90015600-90016600	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:90015600-90017200	Weak transcription	Fetal Intestine Large	intestine
15	chr10:90015800-90016400	Active TSS	Adipose Nuclei	Adipose
16	chr10:90015800-90016400	Flanking Active TSS	Fetal Muscle Leg	muscle
17	chr10:90015800-90016400	Active TSS	NHDF-Ad	bronchial
18	chr10:90015800-90016600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:90015800-90016600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr10:90015800-90016600	Enhancers	Fetal Kidney	kidney
21	chr10:90015800-90017000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:90015800-90018600	Weak transcription	Pancreas	Pancrea
23	chr10:90016000-90016400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:90016000-90016400	Active TSS	Ovary	ovary
25	chr10:90016200-90016400	Flanking Active TSS	HSMMtube	muscle
26	chr10:90016200-90016600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:90016200-90016600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr10:90016200-90016600	Flanking Active TSS	NHLF	lung

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