Variant report

Variant	rs7073755
Chromosome Location	chr10:90145208-90145209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
2	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:
3	chr10:90105977..90106882-chr10:90145125..90145815,2	MCF-7	breast:
4	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
5	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:
6	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11202726	0.82[JPT][hapmap]
rs11202731	0.83[ASN][1000 genomes]
rs11202734	0.88[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12217988	0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12219831	0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12220632	0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1582223	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1582224	0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1613409	0.88[JPT][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1648512	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1648523	0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1774970	0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1774971	0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740279	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs57949777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59184458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59482232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59513062	0.81[ASN][1000 genomes]
rs61260851	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7075138	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097606	0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149712	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149714	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149715	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs792224	0.89[ASN][1000 genomes]
rs792225	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs792228	0.83[ASN][1000 genomes]
rs792229	0.90[ASN][1000 genomes]
rs792232	0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs792234	0.84[YRI][hapmap]
rs796945	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90139800-90146400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:90140000-90145400	Weak transcription	Osteobl	bone
3	chr10:90142400-90145400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:90142600-90145400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:90142800-90145400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:90142800-90145400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:90142800-90145400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr10:90142800-90145400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:90142800-90145400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:90143200-90145400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:90143400-90145400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:90143800-90145400	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:90143800-90145400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:90143800-90145800	Enhancers	Fetal Intestine Small	intestine
15	chr10:90143800-90146200	Enhancers	Fetal Intestine Large	intestine
16	chr10:90144000-90145400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr10:90144000-90145400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:90144200-90145400	Enhancers	Duodenum Mucosa	Duodenum
19	chr10:90144200-90145600	Enhancers	Fetal Kidney	kidney
20	chr10:90144600-90145400	Enhancers	Gastric	stomach
21	chr10:90144600-90145600	Enhancers	Stomach Mucosa	stomach
22	chr10:90144600-90145600	Enhancers	HMEC	breast
23	chr10:90144600-90145800	Enhancers	Colonic Mucosa	Colon
24	chr10:90144600-90146600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:90144600-90146800	Enhancers	NHEK	skin
26	chr10:90144600-90148200	Flanking Active TSS	Dnd41	blood
27	chr10:90144600-90149000	Enhancers	Small Intestine	intestine
28	chr10:90144800-90145400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:90144800-90145600	Flanking Active TSS	GM12878-XiMat	blood
30	chr10:90144800-90146800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:90144800-90147000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:90144800-90148200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:90144800-90148600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:90144800-90149600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:90145000-90145400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr10:90145000-90145600	Flanking Active TSS	A549	lung
37	chr10:90145000-90145800	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr10:90145000-90147600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:90145200-90145400	Enhancers	Brain Anterior Caudate	brain
40	chr10:90145200-90145400	Flanking Active TSS	Pancreas	Pancrea
41	chr10:90145200-90145400	Enhancers	Rectal Smooth Muscle	rectum
42	chr10:90145200-90145400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr10:90145200-90145800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:90145200-90145800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr10:90145200-90145800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:90145200-90145800	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr10:90145200-90145800	Enhancers	Placenta	Placenta
48	chr10:90145200-90145800	Flanking Active TSS	Thymus	Thymus
49	chr10:90145200-90145800	Flanking Active TSS	HepG2	liver
50	chr10:90145200-90146000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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