Variant report

Variant	rs792234
Chromosome Location	chr10:90151021-90151022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
2	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1067839	0.89[CEU][hapmap]
rs1067840	0.88[CEU][hapmap];0.84[AFR][1000 genomes]
rs10736351	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs10749590	0.89[CEU][hapmap]
rs10788592	0.83[JPT][hapmap]
rs10788598	0.88[CEU][hapmap]
rs10788599	0.88[CEU][hapmap]
rs10788600	0.89[CEU][hapmap]
rs10788602	0.88[CEU][hapmap]
rs10887800	0.82[JPT][hapmap]
rs10887801	0.86[JPT][hapmap]
rs10887803	0.82[JPT][hapmap]
rs10887817	0.82[JPT][hapmap]
rs10887821	0.89[CEU][hapmap]
rs10887823	0.89[CEU][hapmap]
rs11202716	0.82[JPT][hapmap]
rs11202723	0.87[JPT][hapmap]
rs11202734	0.92[YRI][hapmap]
rs12217988	0.92[YRI][hapmap]
rs1342450	0.89[CEU][hapmap]
rs1346226	0.82[JPT][hapmap]
rs1426619	0.86[JPT][hapmap]
rs1582224	0.84[YRI][hapmap]
rs1613409	0.92[YRI][hapmap]
rs1617881	0.82[JPT][hapmap]
rs1648520	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1648523	0.84[YRI][hapmap]
rs1750274	0.84[CEU][hapmap]
rs1774971	0.92[YRI][hapmap]
rs1935579	0.88[CEU][hapmap]
rs1935584	0.81[EUR][1000 genomes]
rs2096194	0.88[CEU][hapmap]
rs2185786	0.84[CEU][hapmap]
rs2312610	0.89[CEU][hapmap]
rs2433340	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs2477956	0.85[CEU][hapmap]
rs2576181	0.84[CEU][hapmap]
rs4606392	0.89[CEU][hapmap]
rs4934404	0.88[CEU][hapmap]
rs4934409	0.89[CEU][hapmap]
rs4934411	0.88[CEU][hapmap]
rs59184458	0.82[AFR][1000 genomes]
rs59482232	0.82[AFR][1000 genomes]
rs61260851	0.82[AFR][1000 genomes]
rs6586128	0.81[ASN][1000 genomes]
rs6586129	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6586132	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs7073755	0.84[YRI][hapmap]
rs7075138	0.82[AFR][1000 genomes]
rs7089911	0.82[JPT][hapmap]
rs7097606	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs74149712	0.82[AFR][1000 genomes]
rs74149714	0.84[AFR][1000 genomes]
rs74149715	0.84[AFR][1000 genomes]
rs7895582	0.81[JPT][hapmap]
rs7909697	0.89[CEU][hapmap]
rs7910594	0.85[CEU][hapmap]
rs7911996	0.89[CEU][hapmap]
rs7916050	0.82[ASN][1000 genomes]
rs7917640	0.87[JPT][hapmap]
rs7920126	0.83[JPT][hapmap]
rs7921352	0.92[CEU][hapmap]
rs792208	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs792211	0.81[EUR][1000 genomes]
rs792214	0.85[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs792215	0.86[CEU][hapmap]
rs792232	0.84[YRI][hapmap]
rs792235	0.89[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs796945	0.96[CEU][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs806694	0.89[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs813782	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs814242	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90146800-90155200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90147000-90152400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:90147200-90151600	Weak transcription	HMEC	breast
4	chr10:90147200-90152000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90147200-90152400	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:90147400-90151800	Enhancers	Primary T cells from cord blood	blood
7	chr10:90147400-90152000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:90147400-90152600	Enhancers	Primary B cells from cord blood	blood
9	chr10:90147600-90151800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:90147600-90152000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:90147600-90152800	Enhancers	Fetal Thymus	thymus
12	chr10:90147800-90151400	Enhancers	GM12878-XiMat	blood
13	chr10:90147800-90154600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:90148600-90152000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:90148800-90151600	Enhancers	Dnd41	blood
16	chr10:90148800-90151800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:90148800-90151800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:90148800-90152000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:90149000-90151600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr10:90149000-90151600	Weak transcription	Small Intestine	intestine
21	chr10:90149000-90152000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:90149000-90152600	Weak transcription	Fetal Heart	heart
23	chr10:90149200-90151600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:90149200-90151800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:90149400-90151600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:90149400-90152000	Weak transcription	Fetal Kidney	kidney
27	chr10:90149600-90151400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:90149600-90151400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:90149800-90151400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:90149800-90151600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:90149800-90151600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:90149800-90151600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr10:90149800-90151600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:90150000-90151400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:90150000-90152000	Weak transcription	Fetal Lung	lung
36	chr10:90150200-90151400	Weak transcription	Liver	Liver
37	chr10:90150200-90151600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:90150200-90151600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:90150200-90151800	Weak transcription	Stomach Mucosa	stomach
40	chr10:90150200-90152000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:90150400-90151600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:90150400-90151600	Weak transcription	Thymus	Thymus
43	chr10:90150600-90151600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:90150600-90151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links