Variant report

Variant	rs6586128
Chromosome Location	chr10:90134261-90134262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10749577	0.90[ASN][1000 genomes]
rs10788592	0.94[ASN][1000 genomes]
rs1648520	0.89[ASN][1000 genomes]
rs6586129	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916050	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7917640	0.80[ASN][1000 genomes]
rs7920126	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs792234	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90131600-90134800	Enhancers	Duodenum Mucosa	Duodenum
2	chr10:90132200-90134600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:90132800-90134800	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr10:90132800-90137800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:90133600-90135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:90134000-90134400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr10:90134000-90134600	Enhancers	Fetal Intestine Large	intestine
8	chr10:90134200-90134800	Enhancers	Small Intestine	intestine
9	chr10:90134200-90135000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:90134200-90135200	Enhancers	Primary T cells from cord blood	blood
11	chr10:90134200-90135600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:90134200-90135800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:90134200-90135800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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