Variant report

Variant	rs1648520
Chromosome Location	chr10:90143657-90143658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90141255..90143410-chr10:90143614..90146289,3	MCF-7	breast:
2	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10749577	0.83[ASN][1000 genomes]
rs10788592	0.83[ASN][1000 genomes]
rs6586128	0.89[ASN][1000 genomes]
rs6586129	0.92[ASN][1000 genomes]
rs7916050	0.93[ASN][1000 genomes]
rs7920126	0.87[ASN][1000 genomes]
rs792234	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs796945	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90135800-90144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90139800-90144000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:90139800-90144200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:90139800-90144200	Weak transcription	Fetal Thymus	thymus
5	chr10:90139800-90144600	Weak transcription	Small Intestine	intestine
6	chr10:90139800-90144600	Weak transcription	Thymus	Thymus
7	chr10:90139800-90144800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:90139800-90144800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:90139800-90145200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:90139800-90145200	Weak transcription	NHDF-Ad	bronchial
11	chr10:90139800-90146400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:90140000-90144600	Weak transcription	A549	lung
13	chr10:90140000-90144600	Weak transcription	HMEC	breast
14	chr10:90140000-90145400	Weak transcription	Osteobl	bone
15	chr10:90141800-90143800	ZNF genes & repeats	Dnd41	blood
16	chr10:90141800-90145200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:90142400-90145400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:90142600-90145200	Enhancers	Primary T cells from cord blood	blood
19	chr10:90142600-90145400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:90142800-90145200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:90142800-90145200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:90142800-90145400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:90142800-90145400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:90142800-90145400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr10:90142800-90145400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:90142800-90145400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:90143000-90145000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:90143000-90145200	Enhancers	Primary B cells from cord blood	blood
29	chr10:90143200-90145400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:90143400-90143800	Weak transcription	Fetal Intestine Large	intestine
31	chr10:90143400-90143800	Weak transcription	Fetal Intestine Small	intestine
32	chr10:90143400-90144600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:90143400-90144800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:90143400-90145400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:90143600-90143800	Weak transcription	GM12878-XiMat	blood
36	chr10:90143600-90144000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:90143600-90144600	Weak transcription	Liver	Liver
38	chr10:90143600-90144800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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