Variant report

Variant	rs10788592
Chromosome Location	chr10:90116423-90116424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10749577	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10887800	0.83[JPT][hapmap]
rs10887801	0.87[JPT][hapmap]
rs10887803	0.83[JPT][hapmap]
rs10887805	0.81[EUR][1000 genomes]
rs10887818	0.86[JPT][hapmap]
rs11202715	0.82[EUR][1000 genomes]
rs11202716	0.83[JPT][hapmap]
rs11202723	0.87[JPT][hapmap]
rs1342451	0.86[JPT][hapmap]
rs1346226	0.83[JPT][hapmap]
rs1426619	0.87[JPT][hapmap]
rs1617881	0.90[JPT][hapmap]
rs1648520	0.83[ASN][1000 genomes]
rs2433340	0.81[JPT][hapmap]
rs4934403	0.86[JPT][hapmap]
rs6586125	0.82[EUR][1000 genomes]
rs6586128	0.94[ASN][1000 genomes]
rs6586129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6586132	0.90[JPT][hapmap]
rs7069120	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7089911	0.83[JPT][hapmap]
rs7091137	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7096330	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7895582	0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7899861	0.82[EUR][1000 genomes]
rs7905600	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7916050	0.88[ASN][1000 genomes]
rs7917640	0.84[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7918921	0.86[JPT][hapmap]
rs7920126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs792205	0.86[JPT][hapmap]
rs792209	0.86[JPT][hapmap]
rs792230	0.86[JPT][hapmap]
rs792234	0.83[JPT][hapmap]
rs919115	0.82[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90116000-90117400	Weak transcription	Right Atrium	heart
2	chr10:90116000-90120600	Weak transcription	Thymus	Thymus

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