Variant report

Variant	rs6586125
Chromosome Location	chr10:90076397-90076398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89621287..89622791-chr10:90075182..90076872,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10788592	0.82[EUR][1000 genomes]
rs10887800	0.82[ASN][1000 genomes]
rs10887801	0.84[ASN][1000 genomes]
rs10887802	0.89[ASN][1000 genomes]
rs10887803	0.82[ASN][1000 genomes]
rs10887804	0.82[ASN][1000 genomes]
rs10887805	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887806	0.88[ASN][1000 genomes]
rs11202712	0.87[ASN][1000 genomes]
rs11202713	0.87[ASN][1000 genomes]
rs11202715	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11202716	0.82[ASN][1000 genomes]
rs11202723	0.87[ASN][1000 genomes]
rs1346226	0.82[ASN][1000 genomes]
rs1426618	0.93[ASN][1000 genomes]
rs1426619	0.88[ASN][1000 genomes]
rs4933476	0.90[ASN][1000 genomes]
rs61853517	0.82[ASN][1000 genomes]
rs7069120	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7089911	0.82[ASN][1000 genomes]
rs7091137	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7096330	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7895582	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895674	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7899861	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7905573	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7905600	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917640	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs919115	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90075600-90076400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:90075600-90076400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:90075600-90076400	Enhancers	Dnd41	blood
4	chr10:90075600-90076600	Enhancers	Fetal Thymus	thymus
5	chr10:90075800-90076400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:90076200-90078200	Weak transcription	Thymus	Thymus
7	chr10:90076200-90078600	Weak transcription	Monocytes-CD14+_RO01746	blood

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