Variant report

Variant	rs11202712
Chromosome Location	chr10:90083187-90083188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10887800	0.89[ASN][1000 genomes]
rs10887801	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10887802	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10887803	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10887804	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10887805	0.87[ASN][1000 genomes]
rs10887806	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11202702	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202713	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202715	0.90[ASN][1000 genomes]
rs11202716	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11202723	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1346226	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1426618	0.94[ASN][1000 genomes]
rs1426619	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1582784	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933476	0.97[ASN][1000 genomes]
rs61853517	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6586125	0.87[ASN][1000 genomes]
rs7069120	0.85[ASN][1000 genomes]
rs7089911	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091137	0.83[ASN][1000 genomes]
rs7096330	0.91[ASN][1000 genomes]
rs7895582	0.93[ASN][1000 genomes]
rs7895674	0.88[ASN][1000 genomes]
rs7899861	0.87[ASN][1000 genomes]
rs7905573	0.84[ASN][1000 genomes]
rs7905600	0.91[ASN][1000 genomes]
rs7917640	0.86[ASN][1000 genomes]
rs919115	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90082200-90083400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:90082400-90083400	ZNF genes & repeats	Primary B cells from cord blood	blood

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