Variant report

Variant	rs7895582
Chromosome Location	chr10:90093033-90093034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10788592	0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887800	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10887801	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10887802	0.88[ASN][1000 genomes]
rs10887803	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10887804	0.87[ASN][1000 genomes]
rs10887805	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10887806	0.93[ASN][1000 genomes]
rs10887818	0.80[JPT][hapmap]
rs11202712	0.93[ASN][1000 genomes]
rs11202713	0.93[ASN][1000 genomes]
rs11202715	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202716	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11202723	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1342451	0.82[JPT][hapmap]
rs1346226	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1426618	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1426619	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1582784	0.84[ASN][1000 genomes]
rs1617881	0.81[JPT][hapmap]
rs2433340	0.85[JPT][hapmap]
rs4933476	0.91[ASN][1000 genomes]
rs4934403	0.81[JPT][hapmap]
rs61853517	0.87[ASN][1000 genomes]
rs6586125	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586129	0.90[JPT][hapmap]
rs6586132	0.85[JPT][hapmap]
rs7069120	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089911	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7091137	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096330	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7899861	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905573	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905600	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7917640	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7920126	0.91[JPT][hapmap]
rs792205	0.81[JPT][hapmap]
rs792209	0.82[JPT][hapmap]
rs792230	0.81[JPT][hapmap]
rs792234	0.81[JPT][hapmap]
rs919115	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90089000-90093800	Enhancers	Dnd41	blood
3	chr10:90089600-90094200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:90090000-90096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:90090800-90093400	Enhancers	Adipose Nuclei	Adipose
6	chr10:90090800-90093800	Enhancers	Primary B cells from cord blood	blood
7	chr10:90090800-90093800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:90091000-90094400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:90091000-90095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:90091600-90093800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:90091600-90094400	Enhancers	Primary T cells from cord blood	blood
12	chr10:90091800-90093400	Enhancers	GM12878-XiMat	blood
13	chr10:90091800-90093800	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:90091800-90093800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:90092000-90093800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:90092600-90093400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:90092800-90093600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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