Variant report

Variant	rs10887800
Chromosome Location	chr10:90075843-90075844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89621287..89622791-chr10:90075182..90076872,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10788592	0.83[JPT][hapmap]
rs10887801	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10887802	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887803	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887804	0.96[ASN][1000 genomes]
rs10887806	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11202712	0.89[ASN][1000 genomes]
rs11202713	0.89[ASN][1000 genomes]
rs11202716	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11202723	0.96[CEU][hapmap];0.96[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1346226	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1426618	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1426619	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1582784	0.97[ASN][1000 genomes]
rs1617881	0.82[JPT][hapmap]
rs2433340	0.82[JPT][hapmap]
rs4933476	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61853517	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6586125	0.82[ASN][1000 genomes]
rs6586129	0.81[JPT][hapmap]
rs6586132	0.86[JPT][hapmap]
rs7069120	0.81[ASN][1000 genomes]
rs7089911	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7096330	0.82[ASN][1000 genomes]
rs7895582	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7899861	0.81[ASN][1000 genomes]
rs7905573	0.91[ASN][1000 genomes]
rs7905600	0.85[ASN][1000 genomes]
rs7917640	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7920126	0.83[JPT][hapmap]
rs792234	0.82[JPT][hapmap]
rs796945	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs919115	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90075400-90076000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:90075600-90076000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:90075600-90076200	Enhancers	Primary T cells from cord blood	blood
4	chr10:90075600-90076200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr10:90075600-90076400	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:90075600-90076400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:90075600-90076400	Enhancers	Dnd41	blood
8	chr10:90075600-90076600	Enhancers	Fetal Thymus	thymus
9	chr10:90075800-90076000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90075800-90076200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:90075800-90076200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:90075800-90076200	Enhancers	Thymus	Thymus
13	chr10:90075800-90076200	Enhancers	NHDF-Ad	bronchial
14	chr10:90075800-90076400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links