Variant report

Variant	rs10887804
Chromosome Location	chr10:90089426-90089427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10887800	0.96[ASN][1000 genomes]
rs10887801	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10887802	0.97[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10887803	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887805	0.82[ASN][1000 genomes]
rs10887806	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11202702	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202712	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11202713	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11202715	0.83[ASN][1000 genomes]
rs11202716	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11202723	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1346226	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1426618	0.88[ASN][1000 genomes]
rs1426619	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1582784	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933476	0.91[ASN][1000 genomes]
rs61853517	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6586125	0.82[ASN][1000 genomes]
rs7069120	0.80[ASN][1000 genomes]
rs7089911	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096330	0.86[ASN][1000 genomes]
rs7895582	0.87[ASN][1000 genomes]
rs7895674	0.83[ASN][1000 genomes]
rs7899861	0.81[ASN][1000 genomes]
rs7905573	0.91[ASN][1000 genomes]
rs7905600	0.85[ASN][1000 genomes]
rs7917640	0.81[ASN][1000 genomes]
rs919115	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90085000-90091800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:90086600-90091600	Weak transcription	Aorta	Aorta
4	chr10:90087800-90090200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:90089000-90089800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:90089000-90093800	Enhancers	Dnd41	blood
7	chr10:90089200-90091600	Weak transcription	Primary T cells from cord blood	blood

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