Variant report

Variant	rs11202702
Chromosome Location	chr10:90054268-90054269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10887801	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10887802	0.81[ASN][1000 genomes]
rs10887803	0.85[YRI][hapmap]
rs10887804	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10887806	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11202712	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202713	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11202716	0.85[YRI][hapmap]
rs11202723	0.87[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1346226	0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs1426618	0.86[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs1426619	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1582784	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4933476	0.85[ASN][1000 genomes]
rs7089911	0.93[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
2	chr10:90049000-90056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90051600-90055200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:90051800-90063200	Weak transcription	Pancreas	Pancrea
5	chr10:90052600-90059800	Weak transcription	Primary B cells from cord blood	blood
6	chr10:90052800-90054600	Enhancers	Osteobl	bone
7	chr10:90053200-90056000	Weak transcription	Dnd41	blood
8	chr10:90053800-90054600	Enhancers	A549	lung
9	chr10:90053800-90061000	Weak transcription	NHDF-Ad	bronchial
10	chr10:90054000-90055800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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