Variant report

Variant	rs1346226
Chromosome Location	chr10:90094461-90094462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620144..89622520-chr10:90093536..90095614,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10788592	0.83[JPT][hapmap]
rs10887800	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887801	0.83[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[ASN][1000 genomes]
rs10887802	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10887803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887804	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887805	0.82[ASN][1000 genomes]
rs10887806	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11202702	0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs11202712	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11202713	0.93[ASN][1000 genomes]
rs11202715	0.83[ASN][1000 genomes]
rs11202716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202723	0.84[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1426618	0.83[CHB][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1426619	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1582784	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1617881	0.82[JPT][hapmap]
rs2433340	0.83[JPT][hapmap]
rs4933476	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61853517	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586125	0.82[ASN][1000 genomes]
rs6586129	0.82[JPT][hapmap]
rs6586132	0.86[JPT][hapmap]
rs7069120	0.80[ASN][1000 genomes]
rs7089911	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7096330	0.86[ASN][1000 genomes]
rs7895582	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7895674	0.83[ASN][1000 genomes]
rs7899861	0.81[ASN][1000 genomes]
rs7905573	0.91[ASN][1000 genomes]
rs7905600	0.85[ASN][1000 genomes]
rs7917640	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs7920126	0.83[JPT][hapmap]
rs792234	0.82[JPT][hapmap]
rs796945	0.86[JPT][hapmap]
rs919115	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90084600-90103600	Weak transcription	Ovary	ovary
2	chr10:90090000-90096600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:90091000-90095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:90093400-90095800	Weak transcription	GM12878-XiMat	blood
5	chr10:90093800-90095400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:90093800-90095600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:90093800-90095600	Weak transcription	Primary B cells from cord blood	blood
8	chr10:90094000-90094600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:90094000-90095800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:90094200-90094600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:90094400-90094800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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