Variant report

Variant	rs7905600
Chromosome Location	chr10:90068647-90068648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10788592	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10887800	0.85[ASN][1000 genomes]
rs10887801	0.87[ASN][1000 genomes]
rs10887802	0.86[ASN][1000 genomes]
rs10887803	0.85[ASN][1000 genomes]
rs10887804	0.85[ASN][1000 genomes]
rs10887805	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10887806	0.91[ASN][1000 genomes]
rs11202712	0.91[ASN][1000 genomes]
rs11202713	0.91[ASN][1000 genomes]
rs11202715	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11202716	0.85[ASN][1000 genomes]
rs11202723	0.90[ASN][1000 genomes]
rs1346226	0.85[ASN][1000 genomes]
rs1426618	0.90[ASN][1000 genomes]
rs1426619	0.91[ASN][1000 genomes]
rs1582784	0.83[ASN][1000 genomes]
rs4933476	0.93[ASN][1000 genomes]
rs61853517	0.85[ASN][1000 genomes]
rs6586125	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7069120	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089911	0.85[ASN][1000 genomes]
rs7091137	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096330	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895582	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895674	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7899861	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905573	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7917640	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs919115	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90042800-90071600	Weak transcription	Psoas Muscle	Psoas
2	chr10:90057000-90075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90060200-90070800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:90063800-90071400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links