Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10749577	0.88[ASN][1000 genomes]
rs10788592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10788597	0.87[CEU][hapmap]
rs10887800	0.83[JPT][hapmap]
rs10887801	0.87[JPT][hapmap]
rs10887803	0.83[JPT][hapmap]
rs10887818	0.86[JPT][hapmap]
rs11202716	0.83[JPT][hapmap]
rs11202723	0.87[JPT][hapmap]
rs1342451	0.86[JPT][hapmap]
rs1346226	0.83[JPT][hapmap]
rs1426619	0.87[JPT][hapmap]
rs1617881	0.90[JPT][hapmap]
rs1648520	0.87[ASN][1000 genomes]
rs2433340	0.81[JPT][hapmap]
rs4934403	0.86[JPT][hapmap]
rs6586128	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586132	0.90[JPT][hapmap]
rs7069120	0.82[CHB][hapmap]
rs7089911	0.83[JPT][hapmap]
rs7091137	0.84[CHB][hapmap]
rs7895582	0.91[JPT][hapmap]
rs7916050	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7917640	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7918921	0.86[JPT][hapmap]
rs792205	0.86[JPT][hapmap]
rs792209	0.86[JPT][hapmap]
rs792230	0.86[JPT][hapmap]
rs792234	0.83[JPT][hapmap]
rs919115	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv551838	chr10:90058637-90137045	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90126200-90134200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90130200-90133600	Enhancers	Fetal Intestine Large	intestine
3	chr10:90130200-90134000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:90131600-90134800	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:90132200-90134600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:90132400-90133600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:90132800-90134800	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr10:90132800-90137800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90133000-90134200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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