Variant report

Variant	rs10788597
Chromosome Location	chr10:90183279-90183280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509544	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10736353	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10736355	0.94[EUR][1000 genomes]
rs10749585	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10788595	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10788601	0.95[EUR][1000 genomes]
rs10788604	0.93[EUR][1000 genomes]
rs10887818	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10887820	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10887829	0.81[CEU][hapmap]
rs12266064	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12778446	0.95[EUR][1000 genomes]
rs1342451	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1409134	0.81[CEU][hapmap]
rs1426620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1617881	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1935580	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2153856	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2433340	0.82[CHB][hapmap]
rs4934403	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6586129	0.87[CEU][hapmap]
rs6586130	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6586132	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs7077182	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7096710	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7895199	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7897033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7907866	0.95[EUR][1000 genomes]
rs7913372	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7917100	0.81[CEU][hapmap]
rs7918921	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7919420	0.95[EUR][1000 genomes]
rs7920126	0.87[CEU][hapmap]
rs792205	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7922053	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs792209	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs792230	0.91[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90178000-90188000	Weak transcription	Fetal Lung	lung

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