Variant report

Variant	rs7922053
Chromosome Location	chr10:90159153-90159154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89622921..89625081-chr10:90159029..90160699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10736353	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10736355	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10749585	0.95[EUR][1000 genomes]
rs10788595	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10788597	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10788601	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10788604	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10788605	0.85[AMR][1000 genomes]
rs10887820	0.95[EUR][1000 genomes]
rs10887827	0.85[AMR][1000 genomes]
rs10887829	0.85[AMR][1000 genomes]
rs12266064	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12778446	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1409134	0.85[AMR][1000 genomes]
rs1426620	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935580	0.93[EUR][1000 genomes]
rs2153856	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6586130	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077182	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7096710	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7895199	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7897033	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7902230	0.83[AMR][1000 genomes]
rs7907866	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7913372	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7919420	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1796143	chr10:90156447-90168074	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90156000-90161600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90158800-90159400	ZNF genes & repeats	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links