Variant report

Variant	rs7077182
Chromosome Location	chr10:90216244-90216245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509544	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10736353	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736355	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10749585	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10749586	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10749587	0.97[ASN][1000 genomes]
rs10749588	0.97[ASN][1000 genomes]
rs10788595	0.85[EUR][1000 genomes]
rs10788597	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10788601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10788604	0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10788605	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10887820	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10887827	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10887829	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11202750	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12266064	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12778446	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409134	0.81[CEU][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1426620	0.85[EUR][1000 genomes]
rs1935578	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1935580	0.93[EUR][1000 genomes]
rs2153856	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2477957	0.84[JPT][hapmap]
rs4403718	0.93[ASN][1000 genomes]
rs6586130	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6586134	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7096710	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895199	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7897033	0.85[EUR][1000 genomes]
rs7902230	0.89[AMR][1000 genomes]
rs7904229	0.98[ASN][1000 genomes]
rs7907866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913372	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7916937	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7917100	0.82[CEU][hapmap];0.83[YRI][hapmap]
rs7919420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922053	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90210400-90217600	Weak transcription	Right Atrium	heart
3	chr10:90214200-90217000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:90214800-90217800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:90215200-90217200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:90215400-90216800	Enhancers	Adipose Nuclei	Adipose
7	chr10:90215600-90217200	Enhancers	Osteobl	bone
8	chr10:90215800-90216800	Enhancers	Ovary	ovary
9	chr10:90216200-90216400	Enhancers	Psoas Muscle	Psoas
10	chr10:90216200-90216400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:90216200-90216600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:90216200-90216600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:90216200-90216600	Enhancers	HSMMtube	muscle
14	chr10:90216200-90217200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:90216200-90217200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:90216200-90218400	Enhancers	Fetal Thymus	thymus
17	chr10:90216200-90218600	Enhancers	Primary monocytes fromperipheralblood	blood

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