Variant report

Variant	rs11202750
Chromosome Location	chr10:90214002-90214003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10736353	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10736355	0.93[ASN][1000 genomes]
rs10749586	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10749587	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10749588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10788601	0.92[ASN][1000 genomes]
rs1177587	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1183901	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12778446	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1325907	0.85[CEU][hapmap];0.93[AMR][1000 genomes]
rs1925937	0.85[AMR][1000 genomes]
rs1935578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980812	0.85[AMR][1000 genomes]
rs2077890	0.91[AMR][1000 genomes]
rs2437871	0.85[AMR][1000 genomes]
rs2437872	0.84[CEU][hapmap];0.91[AMR][1000 genomes]
rs2437874	0.92[AMR][1000 genomes]
rs2437877	0.89[AMR][1000 genomes]
rs2437878	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2477952	0.84[AMR][1000 genomes]
rs2477955	0.87[AMR][1000 genomes]
rs2477957	1.00[CEU][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2488271	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2576166	0.85[AMR][1000 genomes]
rs2576174	0.85[CEU][hapmap];0.93[AMR][1000 genomes]
rs2576179	0.85[CEU][hapmap]
rs2576180	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2765442	0.92[AMR][1000 genomes]
rs2765444	0.85[CEU][hapmap];0.92[AMR][1000 genomes]
rs2986118	0.92[AMR][1000 genomes]
rs4403718	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6586134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7077182	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7096710	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs725683	0.85[CEU][hapmap];0.92[AMR][1000 genomes]
rs725684	0.85[CEU][hapmap];0.91[AMR][1000 genomes]
rs7904229	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907866	0.95[ASN][1000 genomes]
rs7913372	0.82[CHB][hapmap]
rs7916937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919420	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90210200-90215400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:90210400-90217600	Weak transcription	Right Atrium	heart
4	chr10:90211000-90215600	Weak transcription	Aorta	Aorta
5	chr10:90211400-90215800	Weak transcription	Ovary	ovary
6	chr10:90213600-90214200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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