Variant report

Variant	rs2986118
Chromosome Location	chr10:90238427-90238428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10749586	0.92[AMR][1000 genomes]
rs10749587	0.91[AMR][1000 genomes]
rs10749588	0.92[AMR][1000 genomes]
rs10788604	0.83[ASN][1000 genomes]
rs10788605	0.86[ASN][1000 genomes]
rs10887827	0.86[ASN][1000 genomes]
rs10887829	0.86[ASN][1000 genomes]
rs11202750	0.92[AMR][1000 genomes]
rs1177587	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1183901	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325900	0.81[YRI][hapmap]
rs1325906	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs1325907	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409134	0.86[ASN][1000 genomes]
rs17112571	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs17112575	0.83[YRI][hapmap]
rs1925937	0.92[AMR][1000 genomes]
rs1935578	0.93[AMR][1000 genomes]
rs1980812	0.90[AMR][1000 genomes]
rs2077890	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2153856	0.97[ASN][1000 genomes]
rs2437871	0.92[AMR][1000 genomes]
rs2437872	0.92[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2437874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2437877	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2437878	0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2477952	0.91[AMR][1000 genomes]
rs2477955	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2477957	0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2488271	0.81[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2576166	0.90[AMR][1000 genomes]
rs2576174	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2576179	0.92[CEU][hapmap];0.87[YRI][hapmap]
rs2576180	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2765441	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2765442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765444	0.92[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4145084	0.81[AFR][1000 genomes]
rs4403718	0.92[AMR][1000 genomes]
rs4934414	0.82[YRI][hapmap]
rs725683	0.92[CEU][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs725684	0.92[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7902230	0.86[ASN][1000 genomes]
rs7904229	0.93[AMR][1000 genomes]
rs7916937	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90233800-90239200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:90235000-90240400	Weak transcription	Aorta	Aorta
3	chr10:90235600-90238600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:90235600-90238800	Weak transcription	Ovary	ovary
5	chr10:90236400-90238600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:90237000-90238600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:90237000-90239200	Enhancers	HMEC	breast
8	chr10:90237200-90239000	Enhancers	NHEK	skin
9	chr10:90237400-90238800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:90238400-90239200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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