Variant report

Variant	rs2153856
Chromosome Location	chr10:90232227-90232228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509544	0.93[CEU][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10736353	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736355	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10749585	0.93[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs10788597	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10788601	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10788604	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10788605	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10887820	0.93[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs10887827	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10887829	0.84[ASW][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1177587	0.87[ASN][1000 genomes]
rs1183901	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12266064	0.93[CEU][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12778446	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1325903	0.81[LWK][hapmap]
rs1325907	0.93[CHD][hapmap];0.91[JPT][hapmap];0.82[MKK][hapmap];0.85[ASN][1000 genomes]
rs1409134	0.88[ASW][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1935580	0.86[EUR][1000 genomes]
rs1952122	0.84[LWK][hapmap];0.85[YRI][hapmap]
rs2077890	0.85[ASN][1000 genomes]
rs2437872	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2437874	0.98[ASN][1000 genomes]
rs2437877	0.83[ASN][1000 genomes]
rs2437878	0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes]
rs2477955	0.81[ASN][1000 genomes]
rs2477957	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs2488271	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2576174	0.91[CHD][hapmap];0.91[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];0.85[ASN][1000 genomes]
rs2576179	0.91[JPT][hapmap]
rs2576180	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2765441	0.90[ASN][1000 genomes]
rs2765442	0.98[ASN][1000 genomes]
rs2765444	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2986118	0.97[ASN][1000 genomes]
rs6586130	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7077182	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7096710	0.93[CEU][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs725683	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs725684	0.89[CHD][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.85[ASN][1000 genomes]
rs745354	0.85[YRI][hapmap]
rs7895199	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7902230	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7907866	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7913372	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7917100	0.91[JPT][hapmap];0.89[YRI][hapmap]
rs7919420	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7922053	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90227600-90237000	Weak transcription	Left Ventricle	heart
2	chr10:90228200-90234000	Weak transcription	Ovary	ovary
3	chr10:90228200-90234200	Weak transcription	Aorta	Aorta
4	chr10:90228400-90233000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:90228600-90232400	Weak transcription	HMEC	breast
6	chr10:90228600-90234000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:90228800-90234000	Weak transcription	Hela-S3	cervix
8	chr10:90229400-90234600	Weak transcription	Psoas Muscle	Psoas
9	chr10:90232000-90232400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:90232000-90232600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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