Variant report

Variant	rs745354
Chromosome Location	chr10:90283044-90283045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736357	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736358	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10788604	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs10788605	0.85[AFR][1000 genomes]
rs10887827	0.82[AFR][1000 genomes]
rs10887829	0.86[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs11202772	0.82[JPT][hapmap]
rs1183901	0.87[CHB][hapmap]
rs1325903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1325907	0.86[CHB][hapmap]
rs1359580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1409134	0.86[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs1925937	0.99[ASN][1000 genomes]
rs1952122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1980812	0.99[ASN][1000 genomes]
rs2153856	0.85[YRI][hapmap]
rs2437871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2437872	0.85[CHB][hapmap]
rs2437878	0.86[CHB][hapmap]
rs2477952	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2477957	0.86[CHB][hapmap]
rs2488271	0.87[CHB][hapmap]
rs2576166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2576174	0.86[CHB][hapmap]
rs2576179	0.87[CHB][hapmap]
rs2576180	0.85[CHB][hapmap]
rs2765444	0.87[CHB][hapmap]
rs7075544	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs725683	0.86[CHB][hapmap]
rs725684	0.86[CHB][hapmap]
rs7917100	0.82[CHB][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90279800-90284000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:90280400-90285200	Weak transcription	HMEC	breast
3	chr10:90281200-90283800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90281200-90283800	Enhancers	Fetal Lung	lung
5	chr10:90281800-90283600	Weak transcription	Ovary	ovary
6	chr10:90281800-90283600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:90281800-90286800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:90282000-90283200	Weak transcription	Liver	Liver
9	chr10:90282000-90285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:90282000-90285200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:90282000-90286800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:90282200-90286400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:90282400-90284000	Enhancers	Fetal Kidney	kidney
14	chr10:90282600-90283600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:90282800-90283800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:90282800-90284000	Weak transcription	HSMMtube	muscle
17	chr10:90283000-90284000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:90283000-90285000	Weak transcription	HSMM	muscle

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