Variant report

Variant	rs10788605
Chromosome Location	chr10:90256541-90256542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509544	0.85[AMR][1000 genomes]
rs10736353	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10736355	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10736357	0.82[AFR][1000 genomes]
rs10736358	0.80[AFR][1000 genomes]
rs10788601	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10788604	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10887827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887829	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1177587	0.97[ASN][1000 genomes]
rs1183901	0.97[ASN][1000 genomes]
rs12266064	0.87[AMR][1000 genomes]
rs12778446	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1325903	0.81[AFR][1000 genomes]
rs1325907	1.00[ASN][1000 genomes]
rs1359580	0.86[AFR][1000 genomes]
rs1409134	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952122	0.84[AFR][1000 genomes]
rs2077890	1.00[ASN][1000 genomes]
rs2153856	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2437872	1.00[ASN][1000 genomes]
rs2437874	0.87[ASN][1000 genomes]
rs2437877	0.98[ASN][1000 genomes]
rs2437878	0.96[ASN][1000 genomes]
rs2477955	0.96[ASN][1000 genomes]
rs2477957	0.97[ASN][1000 genomes]
rs2488271	0.96[ASN][1000 genomes]
rs2576174	1.00[ASN][1000 genomes]
rs2576180	0.97[ASN][1000 genomes]
rs2765442	0.87[ASN][1000 genomes]
rs2765444	1.00[ASN][1000 genomes]
rs2986118	0.86[ASN][1000 genomes]
rs6586130	0.83[AMR][1000 genomes]
rs7075544	0.84[AFR][1000 genomes]
rs7077182	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7096710	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs725683	1.00[ASN][1000 genomes]
rs725684	1.00[ASN][1000 genomes]
rs745354	0.85[AFR][1000 genomes]
rs7895199	0.83[AMR][1000 genomes]
rs7902230	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907866	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7913372	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7919420	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7922053	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90251200-90258800	Weak transcription	Fetal Thymus	thymus
2	chr10:90253400-90258000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:90254000-90256600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:90254000-90259400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90254000-90259600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:90254200-90257400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:90254200-90259200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:90254200-90259400	Weak transcription	Osteobl	bone
9	chr10:90254200-90259600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:90254200-90259600	Weak transcription	NHDF-Ad	bronchial
11	chr10:90254600-90259000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:90255800-90259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:90256000-90258800	Weak transcription	Ovary	ovary
14	chr10:90256000-90259800	Weak transcription	Fetal Kidney	kidney
15	chr10:90256000-90260000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:90256200-90258000	Enhancers	Liver	Liver
17	chr10:90256400-90258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:90256400-90259400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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