Variant report

Variant	rs7895199
Chromosome Location	chr10:90152926-90152927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509544	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736353	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10736355	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10749585	0.92[EUR][1000 genomes]
rs10788595	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10788597	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10788601	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10788604	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10788605	0.83[AMR][1000 genomes]
rs10887820	0.92[EUR][1000 genomes]
rs10887827	0.83[AMR][1000 genomes]
rs10887829	0.83[AMR][1000 genomes]
rs12266064	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12778446	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1409134	0.83[AMR][1000 genomes]
rs1426620	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935580	0.90[EUR][1000 genomes]
rs2153856	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6586130	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077182	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7096710	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7897033	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7902230	0.82[AMR][1000 genomes]
rs7907866	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7913372	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7919420	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922053	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90146800-90155200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90147800-90154600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:90152600-90155400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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