Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509544	0.93[EUR][1000 genomes]
rs10736353	0.95[EUR][1000 genomes]
rs10736355	0.94[EUR][1000 genomes]
rs10749585	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10788595	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10788597	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10788601	0.95[EUR][1000 genomes]
rs10788604	0.93[EUR][1000 genomes]
rs10887820	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12266064	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12778446	0.95[EUR][1000 genomes]
rs1426620	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153856	0.86[EUR][1000 genomes]
rs6586130	0.93[EUR][1000 genomes]
rs7073799	0.91[ASN][1000 genomes]
rs7077182	0.93[EUR][1000 genomes]
rs7096710	0.95[EUR][1000 genomes]
rs7895199	0.90[EUR][1000 genomes]
rs7897033	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7907866	0.95[EUR][1000 genomes]
rs7913372	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7919420	0.95[EUR][1000 genomes]
rs7922053	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90188800-90197200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:90193800-90197200	Weak transcription	HMEC	breast
3	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90196800-90197600	Enhancers	Hela-S3	cervix
5	chr10:90197000-90197400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:90197000-90197600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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