Variant report

Variant	rs10788601
Chromosome Location	chr10:90203660-90203661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10509544	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10736353	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736355	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10749585	0.97[EUR][1000 genomes]
rs10749586	0.94[ASN][1000 genomes]
rs10749587	0.95[ASN][1000 genomes]
rs10749588	0.95[ASN][1000 genomes]
rs10788595	0.87[EUR][1000 genomes]
rs10788597	0.95[EUR][1000 genomes]
rs10788604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10788605	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10887820	0.97[EUR][1000 genomes]
rs10887827	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10887829	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11202750	0.92[ASN][1000 genomes]
rs12266064	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12778446	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1409134	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1426620	0.87[EUR][1000 genomes]
rs1935578	0.95[ASN][1000 genomes]
rs1935580	0.95[EUR][1000 genomes]
rs2153856	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4403718	0.99[ASN][1000 genomes]
rs6586130	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6586134	0.94[ASN][1000 genomes]
rs7077182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096710	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7895199	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7897033	0.88[EUR][1000 genomes]
rs7902230	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7904229	0.94[ASN][1000 genomes]
rs7907866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7913372	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7916937	0.94[ASN][1000 genomes]
rs7919420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7922053	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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