Variant report

Variant	rs6586134
Chromosome Location	chr10:90202725-90202726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1067839	0.89[CEU][hapmap]
rs1067840	0.89[CEU][hapmap]
rs10736351	0.89[CEU][hapmap]
rs10736353	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10736355	0.95[ASN][1000 genomes]
rs10749586	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10749587	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10749588	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10749590	0.89[CEU][hapmap]
rs10788598	0.89[CEU][hapmap]
rs10788599	0.89[CEU][hapmap]
rs10788600	0.89[CEU][hapmap]
rs10788601	0.94[ASN][1000 genomes]
rs10788602	0.89[CEU][hapmap]
rs10887813	0.84[EUR][1000 genomes]
rs10887817	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10887818	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10887821	0.89[CEU][hapmap]
rs10887823	0.89[CEU][hapmap]
rs11202750	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12778446	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1342450	0.89[CEU][hapmap]
rs1342451	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1617881	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1750274	0.85[CEU][hapmap]
rs1935578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1935579	0.89[CEU][hapmap]
rs2096194	0.88[CEU][hapmap]
rs2185786	0.85[CEU][hapmap]
rs2312610	0.89[CEU][hapmap]
rs2433340	0.92[CEU][hapmap]
rs2477956	0.86[CEU][hapmap]
rs2477957	0.84[JPT][hapmap]
rs2488270	0.82[EUR][1000 genomes]
rs2576181	0.85[CEU][hapmap]
rs4403718	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4606392	0.89[CEU][hapmap]
rs4934403	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4934404	0.89[CEU][hapmap]
rs4934409	0.89[CEU][hapmap]
rs4934411	0.89[CEU][hapmap]
rs6586132	0.93[CEU][hapmap]
rs7077182	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7096710	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7904229	0.97[ASN][1000 genomes]
rs7907866	0.97[ASN][1000 genomes]
rs7909697	0.89[CEU][hapmap]
rs7910594	0.82[CEU][hapmap]
rs7911996	0.89[CEU][hapmap]
rs7913372	0.82[CHB][hapmap]
rs7916937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7918921	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7919420	0.98[ASN][1000 genomes]
rs7921352	0.85[CEU][hapmap]
rs792205	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs792207	1.00[CEU][hapmap]
rs792208	0.89[CEU][hapmap]
rs792209	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs792212	0.83[EUR][1000 genomes]
rs792213	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs792214	0.86[CEU][hapmap]
rs792215	0.87[CEU][hapmap]
rs792230	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs792235	0.89[CEU][hapmap]
rs806694	0.89[CEU][hapmap]
rs811558	0.82[EUR][1000 genomes]
rs813782	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90193800-90227600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90201600-90202800	Enhancers	Right Atrium	heart
3	chr10:90202200-90202800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:90202200-90203200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:90202400-90202800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr10:90202400-90202800	Enhancers	Fetal Heart	heart
7	chr10:90202400-90202800	Enhancers	Right Ventricle	heart
8	chr10:90202400-90203000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:90202600-90202800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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