Variant report

Variant	rs792212
Chromosome Location	chr10:90174153-90174154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1067839	0.80[EUR][1000 genomes]
rs1067840	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10887813	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887817	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1342451	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617881	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935584	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2433340	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2488270	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933480	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4934403	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6586132	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6586134	0.83[EUR][1000 genomes]
rs7907732	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7918921	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs792205	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792207	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792208	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs792209	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792211	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs792213	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792214	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs792215	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs792230	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792235	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs792236	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs806694	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs811558	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs813782	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs814242	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90171400-90175800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:90171800-90177000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:90173000-90174400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:90173200-90175600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:90173400-90174600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:90173400-90175400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:90173600-90175400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:90174000-90175400	Weak transcription	GM12878-XiMat	blood

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