Variant report

Variant	nsv1050587
Chromosome Location	chr10:90146582-90272627
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:
2	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
3	chr10:89610488..89611143-chr10:90161415..90162330,2	MCF-7	breast:
4	chr10:90168585..90170289-chr10:90173744..90175813,2	MCF-7	breast:
5	chr10:90233064..90234940-chr11:69455221..69456769,2	MCF-7	breast:
6	chr10:90212145..90213848-chr10:90226282..90228506,2	MCF-7	breast:
7	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
8	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
9	chr10:90020897..90023455-chr10:90147656..90149656,2	MCF-7	breast:
10	chr10:90145294..90146833-chr10:90461618..90463490,2	MCF-7	breast:
11	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
12	chr10:90212145..90213848-chr10:90226282..90228506,2	MCF-7	breast:
13	chr10:89622921..89625081-chr10:90159029..90160699,2	MCF-7	breast:
14	chr10:90266844..90269778-chr10:90274233..90275948,2	MCF-7	breast:
15	chr10:90236461..90237236-chr2:107269345..107270266,2	MCF-7	breast:
16	chr10:89621134..89622891-chr10:90266765..90269428,2	MCF-7	breast:
17	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:
18	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:
19	chr10:89619429..89620951-chr10:90148728..90149780,5	MCF-7	breast:
20	chr10:90168807..90170308-chr10:90178999..90180633,2	MCF-7	breast:
21	chr10:90253538..90255456-chr10:90264130..90266420,2	MCF-7	breast:
22	chr10:90161662..90162205-chr10:90312601..90313346,2	MCF-7	breast:
23	chr10:90195064..90196949-chr10:90198121..90201199,3	MCF-7	breast:
24	chr10:90234207..90234776-chr10:90285280..90285826,2	MCF-7	breast:
25	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
26	chr10:90243048..90244941-chr10:90246106..90249006,2	MCF-7	breast:
27	chr10:90249239..90251953-chr13:73810044..73812840,2	MCF-7	breast:
28	chr10:89610378..89611175-chr10:90148936..90149878,2	MCF-7	breast:
29	chr10:90243048..90244941-chr10:90246106..90249006,2	MCF-7	breast:
30	chr10:90253538..90255456-chr10:90264130..90266420,2	MCF-7	breast:
31	chr10:90196554..90197353-chr10:90234056..90234795,2	MCF-7	breast:
32	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
33	chr10:90144173..90146300-chr10:90233140..90235508,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110092	chromatin interactions
ENSG00000227268	chromatin interactions
ENSG00000171862	chromatin interactions

Extended variants
information (count: 4158 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:4158 , 50 per page) page: 1 2 3 4 5 6 7 ... 84

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534878671	chr10:90146586-90146587	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs548973960	chr10:90146601-90146602	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs140398515	chr10:90146607-90146608	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs372364605	chr10:90146617-90146618	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs562149455	chr10:90146640-90146641	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs376455649	chr10:90146672-90146673	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs575404100	chr10:90146686-90146687	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs367598496	chr10:90146751-90146752	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs565976460	chr10:90146783-90146784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs534473957	chr10:90146839-90146840	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs145186627	chr10:90146863-90146864	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs565430914	chr10:90146945-90146946	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs577475318	chr10:90146995-90146996	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs541672908	chr10:90147070-90147071	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs74149714	chr10:90147122-90147123	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs143441489	chr10:90147139-90147140	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs530136146	chr10:90147145-90147146	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs548273913	chr10:90147243-90147244	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs74149715	chr10:90147245-90147246	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs5786817	chr10:90147260-90147261	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs200618519	chr10:90147281-90147282	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs200935730	chr10:90147283-90147284	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs537175344	chr10:90147309-90147310	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs792232	chr10:90147344-90147345	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs551963743	chr10:90147392-90147393	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs573649992	chr10:90147406-90147407	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs570279881	chr10:90147423-90147424	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs534634573	chr10:90147463-90147464	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs147627744	chr10:90147472-90147473	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs188146239	chr10:90147514-90147515	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs535476517	chr10:90147516-90147517	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs556995326	chr10:90147565-90147566	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs192711021	chr10:90147595-90147596	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs370712809	chr10:90147609-90147610	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs114074425	chr10:90147645-90147646	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs539497217	chr10:90147656-90147657	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs183634135	chr10:90147668-90147669	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs577337746	chr10:90147677-90147678	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs541242297	chr10:90147683-90147684	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs573484792	chr10:90147732-90147733	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs553661992	chr10:90147751-90147752	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs529285922	chr10:90147788-90147789	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs575022639	chr10:90147799-90147800	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs111864371	chr10:90147807-90147808	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs368003652	chr10:90147865-90147866	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs541867182	chr10:90147901-90147902	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs563295143	chr10:90147902-90147903	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs530929255	chr10:90147957-90147958	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs545866793	chr10:90148069-90148070	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs118130672	chr10:90148155-90148156	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Melanoma	20877625	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:1046 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90144600-90146600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:90144600-90146800	Enhancers	NHEK	skin
3	chr10:90144600-90148200	Flanking Active TSS	Dnd41	blood
4	chr10:90144600-90149000	Enhancers	Small Intestine	intestine
5	chr10:90144800-90146800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:90144800-90147000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:90144800-90148200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:90144800-90148600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:90144800-90149600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:90145000-90147600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:90145200-90146600	Enhancers	Brain Hippocampus Middle	brain
12	chr10:90145200-90146600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:90145200-90146600	Enhancers	Psoas Muscle	Psoas
14	chr10:90145200-90146800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:90145200-90146800	Flanking Active TSS	Liver	Liver
16	chr10:90145200-90147200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:90145200-90147200	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr10:90145200-90147200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:90145200-90147200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:90145200-90147200	Enhancers	NHDF-Ad	bronchial
21	chr10:90145200-90147400	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr10:90145200-90147400	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr10:90145200-90147600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:90145200-90147600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:90145200-90147600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:90145200-90147600	Enhancers	Fetal Muscle Leg	muscle
27	chr10:90145200-90147600	Flanking Active TSS	Fetal Thymus	thymus
28	chr10:90145400-90146600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr10:90145400-90146600	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr10:90145400-90146600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr10:90145400-90146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:90145400-90147000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr10:90145400-90147000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr10:90145400-90147000	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr10:90145400-90147200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:90145400-90147200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr10:90145400-90147200	Enhancers	HSMM	muscle
38	chr10:90145400-90147400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
39	chr10:90145400-90147400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr10:90145400-90147600	Enhancers	NHLF	lung
41	chr10:90145400-90147800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:90145600-90147400	Flanking Active TSS	Fetal Kidney	kidney
43	chr10:90145600-90147800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr10:90145800-90146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:90145800-90146600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr10:90145800-90146600	Enhancers	Pancreas	Pancrea
47	chr10:90145800-90146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:90145800-90146800	Weak transcription	Placenta	Placenta
49	chr10:90145800-90147000	Active TSS	Aorta	Aorta
50	chr10:90145800-90147000	Flanking Active TSS	Fetal Intestine Small	intestine

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