Variant report

Variant	rs541867182
Chromosome Location	chr10:90147901-90147902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89631936..89633868-chr10:90147243..90149574,2	MCF-7	breast:
2	chr10:90020897..90023455-chr10:90147656..90149656,2	MCF-7	breast:
3	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
4	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
5	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90144600-90148200	Flanking Active TSS	Dnd41	blood
2	chr10:90144600-90149000	Enhancers	Small Intestine	intestine
3	chr10:90144800-90148200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:90144800-90148600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:90144800-90149600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:90145800-90148000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:90145800-90149200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90146000-90149000	Enhancers	Fetal Heart	heart
9	chr10:90146200-90149000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:90146200-90150000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:90146200-90150200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:90146400-90148000	Active TSS	Fetal Brain Male	brain
13	chr10:90146400-90148800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr10:90146400-90149800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:90146600-90148200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:90146600-90148400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:90146600-90149800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:90146800-90148400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:90146800-90155200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:90147000-90148200	Enhancers	Fetal Stomach	stomach
21	chr10:90147000-90148400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:90147000-90148800	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:90147000-90149200	Enhancers	Fetal Intestine Small	intestine
24	chr10:90147000-90149600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:90147000-90149800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:90147000-90150000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:90147000-90150200	Enhancers	Stomach Mucosa	stomach
28	chr10:90147000-90150600	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:90147000-90152400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:90147200-90148600	Weak transcription	NHDF-Ad	bronchial
31	chr10:90147200-90149000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:90147200-90149000	Enhancers	Fetal Intestine Large	intestine
33	chr10:90147200-90149400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr10:90147200-90149600	Enhancers	Adipose Nuclei	Adipose
35	chr10:90147200-90149800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:90147200-90150200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:90147200-90150400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr10:90147200-90151600	Weak transcription	HMEC	breast
39	chr10:90147200-90152000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:90147200-90152400	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:90147400-90148000	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr10:90147400-90149400	Enhancers	Fetal Kidney	kidney
43	chr10:90147400-90149400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:90147400-90149800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:90147400-90150200	Enhancers	Liver	Liver
46	chr10:90147400-90151800	Enhancers	Primary T cells from cord blood	blood
47	chr10:90147400-90152000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr10:90147400-90152600	Enhancers	Primary B cells from cord blood	blood
49	chr10:90147600-90148000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:90147600-90148400	Enhancers	Brain Anterior Caudate	brain

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